Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_L16
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0081 + 20745627-20748144,20748211-20748308                       31   1.5  
07_01_1022 - 8815675-8816809,8819696-8819907                           29   4.7  
04_03_1017 + 21747044-21748051                                         29   4.7  
02_01_0724 - 5415218-5415280,5415398-5415523,5415614-5415710,541...    29   6.2  
09_06_0088 + 20774901-20775491,20776172-20776687                       28   8.2  
03_06_0571 + 34804375-34804413,34804895-34804961,34806327-348065...    28   8.2  
02_05_0215 + 26833213-26833599                                         28   8.2  
01_05_0714 + 24555494-24555637,24555884-24556071,24556195-245562...    28   8.2  

>09_06_0081 + 20745627-20748144,20748211-20748308
          Length = 871

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 26/82 (31%), Positives = 30/82 (36%)
 Frame = -3

Query: 709 RXRTVSRLRRGTLCLRSPPRYASDSSRTRCRSGCPVPSSPTATRTAPGYLRENPPDS*TR 530
           R RT+S   R        PR  +  + T      PVP  PT TR  P      PP     
Sbjct: 326 RMRTISLALRAPAPHLRAPRTLAPPAPTPPAPATPVPMPPTPTRLVPTPPAPGPPADVPP 385

Query: 529 HFHRG*P*CARHLGGLDGRSLV 464
            F    P   R   G DG SL+
Sbjct: 386 RFTVS-PTTTRPSFGYDGASLL 406


>07_01_1022 - 8815675-8816809,8819696-8819907
          Length = 448

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 552 IHLTVEHDTFTEDSRDVHGILVVLMAGHW*IDKQQEEQAGGDVRRLHGAP 403
           +H+   H  +  D+  +   + VL AGHW ++        G+V  +H AP
Sbjct: 230 VHIDEPHGRWAADAGTID--VAVLAAGHWFLNGAVYYNGSGEVVGVHNAP 277


>04_03_1017 + 21747044-21748051
          Length = 335

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 655 PRYASDSSRTRCRSGCPVPSSPTATRTAPGYLRENPP 545
           P Y+ +S   R  S    P+SP+    +P Y  E+PP
Sbjct: 118 PDYSPESPPRRAASPDYTPASPSRRAASPDYTPESPP 154


>02_01_0724 -
           5415218-5415280,5415398-5415523,5415614-5415710,
           5415797-5415861,5415964-5416026,5416127-5416197,
           5416430-5416489,5416564-5416663,5416863-5416938,
           5417284-5417358,5417451-5417575,5417664-5417722,
           5418031-5418109,5418303-5418533
          Length = 429

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 535 FNCQVDFPEDIPVPYVLQWEKKGQDIPIYIW 627
           F C+    E  P+PY+ +      DIP+ +W
Sbjct: 285 FTCEAPKQEPEPLPYLAEKNHVNYDIPLEVW 315


>09_06_0088 + 20774901-20775491,20776172-20776687
          Length = 368

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -2

Query: 461 LTSSRRSKPAAMCGGCTARQPMPALPCHGRARRLIVDGSSFAINVFFSKS*FVGRCRLIP 282
           L+   RS  AA+ G C A   +  +    RAR   +  S  A   F+ K     R + IP
Sbjct: 37  LSHEERSLRAALKGRCLALAALERIRLRQRARLRYLKHSGTASQFFYLKINARRRKKTIP 96

Query: 281 ILQ 273
           +LQ
Sbjct: 97  VLQ 99


>03_06_0571 +
           34804375-34804413,34804895-34804961,34806327-34806541,
           34806588-34806740
          Length = 157

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 567 DIFGKIHLTVEHDTFTEDSRDVHGILVVL 481
           D+F ++H++V      +  RDV G+ V+L
Sbjct: 129 DVFVRVHMSVTKSRVFDRKRDVSGVFVIL 157


>02_05_0215 + 26833213-26833599
          Length = 128

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 622 CRSGCPVPSSPTATRTAPGYLRENPPDS 539
           C   CP PS+P+ T + P Y  + P ++
Sbjct: 23  CGKYCPTPSTPSTTPSTPSYNTKCPKNA 50


>01_05_0714 +
           24555494-24555637,24555884-24556071,24556195-24556280,
           24556359-24556461,24556798-24557000,24557077-24557681,
           24557784-24557918,24558040-24558067,24559517-24559596,
           24559873-24559975,24560553-24560635,24560915-24561017,
           24561596-24561720,24562001-24562103,24562647-24562726,
           24563322-24563429,24563521-24563565
          Length = 773

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -3

Query: 673 LCLRSPPRYASDSSRTRCRSGCPVPSSPTATRTAPGYLRE---NPPDS*T 533
           LC +SP R +SD+       G     +P+ +  +P ++ E   NPPD  T
Sbjct: 360 LCKQSPVRRSSDAVGLMINEGSTAMETPSPSIKSPEHVLESESNPPDGVT 409


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,847,183
Number of Sequences: 37544
Number of extensions: 620270
Number of successful extensions: 1783
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1781
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)