Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_L16
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    27   0.29 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    27   0.29 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.7  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   6.2  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   8.2  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   8.2  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   8.2  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 845 ARWRVHVPXGPMYHXYAGLVIG 780
           A W  + P  PM+H   G VIG
Sbjct: 39  ANWYQYPPLNPMWHGILGFVIG 60


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 845 ARWRVHVPXGPMYHXYAGLVIG 780
           A W  + P  PM+H   G VIG
Sbjct: 5   ANWYQYPPLNPMWHGILGFVIG 26


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 432 GDVRRLHGAPAHACAPMSRP 373
           G   R+HG+PA   AP   P
Sbjct: 439 GSACRIHGSPATTAAPPQLP 458


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = -2

Query: 461 LTSSRRSKPAAMCGGCTAR-QPMPALPCHGRARRLIVDGSS 342
           L+ S  +  A   G C     P+P LP H     L V G +
Sbjct: 419 LSPSSLADGARFGGSCLIHGPPLPPLPLHTECEDLSVSGEA 459


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = -2

Query: 461 LTSSRRSKPAAMCGGCTAR-QPMPALPCHGRARRLIVDGSS 342
           L+ S  +  A   G C     P+P LP H     L V G +
Sbjct: 419 LSPSSLADGARFGGSCLIHGPPLPPLPLHTECEDLSVSGEA 459


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 241 PHSAIVGRETGVASLSGPV 185
           PH A   R  G AS+ GPV
Sbjct: 609 PHKAFTYRMHGYASVVGPV 627


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
 Frame = -2

Query: 596 FSHCNTYGTGISSGKST*QLNTTLSPRI------AVMCTASWWS*WQVTGRLTSSRRSKP 435
           F   + +   + SG +T + N+  S  +      A  CT  WWS    T   T    SKP
Sbjct: 164 FMQMDEFVVNLKSGSNTIERNSHESXFVVPTRVPATCCTTXWWS--XXTVAXTFKYSSKP 221


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -1

Query: 126 LCRMWL*CEII 94
           LC++WL C+++
Sbjct: 108 LCKLWLTCDVL 118


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -1

Query: 126 LCRMWL*CEII 94
           LC++WL C+++
Sbjct: 108 LCKLWLTCDVL 118


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -1

Query: 126 LCRMWL*CEII 94
           LC++WL C+++
Sbjct: 108 LCKLWLTCDVL 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 259,763
Number of Sequences: 438
Number of extensions: 5994
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)