Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_L13
(820 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.48
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 1.9
05_04_0031 + 17353292-17354353 30 1.9
03_02_0529 + 9218734-9218793,9218898-9220050,9220133-9220192,922... 30 2.5
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.4
09_06_0207 - 21585910-21586027,21586642-21587193,21587270-21587577 29 5.9
09_02_0495 + 9880714-9881196 29 5.9
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 7.8
05_01_0142 - 940421-940701,941262-941574 28 7.8
02_01_0302 - 2021221-2023305 28 7.8
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 7.8
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.48
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 316 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 152
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 214 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 330
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>05_04_0031 + 17353292-17354353
Length = 353
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +2
Query: 215 SESTVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAAXPPGTTLSG 394
S S + +LAD + I RL + +W ++ +S RL LL AA PP T +
Sbjct: 26 SPSPLSVLADDVLLQILGRLEGDPRDWARAS--CASPRL----AALLRAACLPPRLTRAL 79
Query: 395 PVXLITAPSP 424
P L+ PSP
Sbjct: 80 PAELLPPPSP 89
>03_02_0529 +
9218734-9218793,9218898-9220050,9220133-9220192,
9220284-9220363,9220486-9220730,9220815-9221138,
9221211-9221274,9221968-9222144
Length = 720
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = -2
Query: 414 AVIKXTGPESVVPG---GXAAAFS--STTSGLHKRSEDTSQVLQP 295
A+ PESV G G AAA + +TTSG HK + D +L P
Sbjct: 159 AIADRWSPESVESGAFTGDAAAIAMPATTSGFHKNAPDMYNLLDP 203
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 229 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 140
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>09_06_0207 - 21585910-21586027,21586642-21587193,21587270-21587577
Length = 325
Score = 28.7 bits (61), Expect = 5.9
Identities = 23/63 (36%), Positives = 29/63 (46%)
Frame = -2
Query: 450 RANVQALYPGDGAVIKXTGPESVVPGGXAAAFSSTTSGLHKRSEDTSQVLQPHSPAFQLS 271
RA PGD + GP SV+ GG A +T SGL S + + PA L+
Sbjct: 96 RAGEVTWCPGDFSYFILAGPMSVL-GGLDAGLLATASGL--TSPEQAATAFRSQPAALLT 152
Query: 270 RLS 262
RLS
Sbjct: 153 RLS 155
>09_02_0495 + 9880714-9881196
Length = 160
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = -2
Query: 738 GAXGXXXXXPXXGXXPGGFXXKXXGXXPXGGXPPXP 631
G G P G PG F G P G PP P
Sbjct: 73 GLFGGTYPPPPPGVMPGAFAPPFGGGFPYGPAPPPP 108
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 101 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 256
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/45 (28%), Positives = 15/45 (33%)
Frame = -2
Query: 738 GAXGXXXXXPXXGXXPGGFXXKXXGXXPXGGXPPXPXXGFAPPXG 604
G G P G P G+ P G P P + PP G
Sbjct: 22 GVAGGHGYPPHQGYPPQGYPPPPGAYPPPPGAYPPPPGAYPPPPG 66
>02_01_0302 - 2021221-2023305
Length = 694
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = -2
Query: 693 PGGFXXKXXGXXPXGGXPPXPXXGFAPPXGXXXKXP 586
P G P G PP P G+ PP G P
Sbjct: 568 PPGSYGPIPSTPPSSGSPPSPSSGYQPPSGQPGASP 603
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 343 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 176
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,453,266
Number of Sequences: 37544
Number of extensions: 414574
Number of successful extensions: 1228
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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