Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_L12
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    30   0.48 
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   1.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.8  
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ...    26   7.8  

>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 382 TARAGSFPFPRRLPFSRHRHSPPLLLAVLQHRGVTNP 492
           T R+ S  FP   PFSR  H   ++  +LQH     P
Sbjct: 872 TIRSPSISFPSTFPFSRASHEFKVIHCLLQHDPTKRP 908


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 488 ILSGASPFGEFNKSPGAAPPGQEDSKMSEDCISESASDIVRFLRDRYPSIRAEYL 652
           + S ASPF   N++P A PP  ++ +      + S  D+V+    + P I  E+L
Sbjct: 154 VKSSASPFVP-NQNPSAPPPPPQEYRQLNVTDALSYLDLVKLQFHQEPEIYNEFL 207


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 227 PPLPTAFFKAKPIATF-SFLWHSQASDFL 310
           PP PT + +A+P   F SF+   Q + F+
Sbjct: 222 PPQPTGYLQAQPTGPFASFVQPQQTASFM 250


>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 418 LPFSRHRHSPPLLLAVLQHRGVTNPIRGLAFRRVQQKS 531
           LPF   R++PPL   +L      N  R +AF +  Q S
Sbjct: 123 LPFVAFRYAPPLTEDMLDELKKANVSRAVAFSQYPQWS 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,209,323
Number of Sequences: 5004
Number of extensions: 64721
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)