Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_L12
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1053 + 27224824-27225618 31 0.89
11_06_0509 - 24411655-24411990 31 1.5
12_01_0132 - 990833-991287,991470-991593,991987-991991,992628-99... 30 2.0
07_01_0523 - 3879550-3880134,3880313-3880491,3881519-3882383 30 2.0
08_02_1484 - 27453400-27453729 29 4.7
08_02_0617 + 19363232-19363297,19364368-19364571,19364652-193649... 29 4.7
06_03_0634 + 22963211-22963270,22963532-22963628,22964604-229647... 29 4.7
03_06_0222 + 32466379-32466741,32466849-32466948,32467443-324675... 29 4.7
11_01_0121 - 948450-948904,949073-949224,949389-949449,950201-95... 29 6.2
04_04_1521 - 34140669-34140878 29 6.2
07_01_0973 - 8193002-8193261,8193388-8193485,8194117-8194401,819... 28 8.3
>06_03_1053 + 27224824-27225618
Length = 264
Score = 31.5 bits (68), Expect = 0.89
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 614 LRDRYPSIRAEYLAYRASGXXSLPPRV 694
+RDRYP + AE A A+G +LPP V
Sbjct: 183 MRDRYPLLVAEVEALAAAGELALPPHV 209
>11_06_0509 - 24411655-24411990
Length = 111
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -1
Query: 515 RRKARPRI-GFVTPLCCRTARSRGGECLCRE-NGNRRGKGKEPARA 384
RR R I G VTPL R RS E C E G RR + +EP A
Sbjct: 19 RRAGRVSIVGRVTPLTMRARRSAWKEGSCGEPKGKRRQRAREPEAA 64
>12_01_0132 -
990833-991287,991470-991593,991987-991991,992628-992763,
993417-993751,994912-994966
Length = 369
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 173 QATNGSARPHYRIVRTMYSRSLHCRA 96
Q+ GS P YR+ R + + S+HCRA
Sbjct: 328 QSVLGSGLPSYRVNRRLTTNSVHCRA 353
>07_01_0523 - 3879550-3880134,3880313-3880491,3881519-3882383
Length = 542
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 573 KIVSVKVLVTLSGSSGIGTRQLGPST*RIGPPVGNPSPPGFGXRVF-QPCLGSTPXA 740
K + K T S SSG + GP+T RI G P PP R+ C+ STP A
Sbjct: 397 KAKTEKKKATSSASSGGSS---GPATKRIRASNGGPMPPAKAGRLTNNACVSSTPAA 450
>08_02_1484 - 27453400-27453729
Length = 109
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 400 FPFPRRLPFSRHRHSPPLLLAVLQ 471
FPFP L +RHRH+P L +++
Sbjct: 26 FPFPTALAAARHRHAPTDLTLMME 49
>08_02_0617 +
19363232-19363297,19364368-19364571,19364652-19364970,
19365259-19365578,19365636-19365864,19365979-19366250
Length = 469
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 428 HGIGIPPPCSLLSCSTGGL-QILSGASPFGEFNKSPGAAPPGQEDSKMSE 574
HG+G+ + S +GG +L+G SPFG+ PG Q + + E
Sbjct: 146 HGVGLTGAGAQTSSDSGGNGSVLAGISPFGDNVHLPGGVGGDQHLTAVGE 195
>06_03_0634 +
22963211-22963270,22963532-22963628,22964604-22964733,
22965132-22965310,22965456-22965583,22965698-22965769,
22966984-22967082
Length = 254
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -2
Query: 610 PDNVTSTFTDTIFTHLAVFLPGGGGPGTFVELAERR 503
P+N F D F ++ PGGG G+++ + +R
Sbjct: 27 PENGIGLFPDVGFAYIGAKAPGGGAVGSYLGMTGKR 62
>03_06_0222 +
32466379-32466741,32466849-32466948,32467443-32467547,
32467627-32467789,32467995-32468115,32468625-32468705,
32468813-32468911,32468955-32468986,32468987-32469137,
32469477-32469563,32470290-32470409,32470514-32470645,
32470743-32470840,32470919-32471042,32471126-32471233,
32471822-32471957,32472751-32472861,32472963-32473026,
32473133-32473205,32473762-32473938,32474012-32474122,
32474189-32474449,32474811-32474981,32475073-32475228,
32475590-32475823,32475936-32476103,32476316-32476425,
32476513-32477041
Length = 1394
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 449 PCSLLSCSTGGLQILSGASPFGEFNKSPGAAPP 547
P + +C GL ++ SPF F K G +PP
Sbjct: 26 PLAEAACRKSGLSVVDMLSPFSLFKKIDGDSPP 58
>11_01_0121 -
948450-948904,949073-949224,949389-949449,950201-950336,
951042-951376,952523-952577
Length = 397
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 173 QATNGSARPHYRIVRTMYSRSLHCRA 96
Q+ GS P YR+ R + + +HCRA
Sbjct: 356 QSVLGSGLPSYRVNRRLMTNRVHCRA 381
>04_04_1521 - 34140669-34140878
Length = 69
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +2
Query: 449 PCSLLSCSTGGLQILSGASPFGEFNKSPGAAPPGQEDSKMSEDCISESASD 601
P + S TGG ++L + E P AAP E+S SE S SA+D
Sbjct: 19 PFAEASTVTGGSRVLLASDAPAESPAGPAAAPGPAEESS-SESAPSPSAAD 68
>07_01_0973 -
8193002-8193261,8193388-8193485,8194117-8194401,
8195559-8195773,8196549-8197058
Length = 455
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 524 KSPGAAPPGQEDSKMSEDCISESASDIVRFLRDRYPSIRAEYL 652
K P AA E ++ +E+ E+A ++ RFL PS+ +YL
Sbjct: 129 KRPPAAESAPEPARAAEE---EAAGNLERFLSSTTPSVPVQYL 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,493,825
Number of Sequences: 37544
Number of extensions: 575546
Number of successful extensions: 1792
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1791
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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