Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_L10
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    32   0.12 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    29   1.1  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    28   1.4  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    28   1.9  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    28   1.9  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    27   4.4  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   4.4  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    26   7.7  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
 Frame = +3

Query: 363 SSTHLRAYSVARSQTW*SATNGANTGAQSESTTNSATTEISYANTHTGITEWAP---SIN 533
           SST L + S A S T  S ++   +   S + T++++T ++  N+ T  +  +    S+N
Sbjct: 320 SSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVN 379

Query: 534 RSLTRSASYTAFTNSNT 584
            +   SAS T  T++N+
Sbjct: 380 STSATSASSTPLTSANS 396



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/72 (20%), Positives = 39/72 (54%)
 Frame = +3

Query: 363 SSTHLRAYSVARSQTW*SATNGANTGAQSESTTNSATTEISYANTHTGITEWAPSINRSL 542
           +S+ L + S   S    S+TN   +   + S T+S+ +  + +N+ T  +  + S+N + 
Sbjct: 145 TSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTT 204

Query: 543 TRSASYTAFTNS 578
           + +A+ ++ +++
Sbjct: 205 SATATSSSLSST 216



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +3

Query: 387 SVARSQTW*SATNGANTGAQSESTTNSATTEISYANTHTGITEWAP---SINRSLTRSAS 557
           S   S T  SA++   +   S + T++++T ++  N+ T  +  +    S+N +   SAS
Sbjct: 442 SSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSAS 501

Query: 558 YTAFTNSNT 584
            T  T++N+
Sbjct: 502 STPLTSANS 510


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +3

Query: 417 ATNGANTGAQSESTTNSATTEIS--YANTHTGITEWAPSINRSLTRSASY-TAFTNSNT 584
           +TN   TG  S +TT SAT   S  Y+N+    T    S++   + S+SY T  T SNT
Sbjct: 272 STNLTTTG--STTTTGSATVSSSPFYSNSSVIPTSVPSSVSSFTSSSSSYTTTLTASNT 328


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 414 SATNGANTGAQSESTTNSATTEISYANTHTGITEWAPSINRSLTRSASYTAFTN 575
           S+   + T   S S+  S+TT  S + +    T   PSI+ +++ S S ++FT+
Sbjct: 115 SSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTSSFTS 168


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/57 (26%), Positives = 38/57 (66%)
 Frame = +3

Query: 414 SATNGANTGAQSESTTNSATTEISYANTHTGITEWAPSINRSLTRSASYTAFTNSNT 584
           S+T+G+++G+ S STT S+++  S ++  +G +  + S   S + S+++++ ++S +
Sbjct: 425 SSTSGSSSGSSSASTTASSSSVSSGSSISSGSSSMSTSYT-SASGSSAHSSGSSSGS 480


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +3

Query: 435 TGAQSESTTNSATTEI--SYANTHTGITEWAPSINRSLTRSASYTAFTNSN 581
           T ++S S+  +++TE+  SY+ + T +T   P+ +   T ++SY A  +S+
Sbjct: 153 TSSESSSSYPASSTEVASSYSASSTEVTSSYPASSEVATSTSSYVAPVSSS 203


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 614 CIVGWLCSLSCVRVCEGC 561
           C+ GWLC  + + VC+ C
Sbjct: 71  CLNGWLCESNNILVCDVC 88


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +3

Query: 414  SATNGANTGAQ--SESTTNSATTEISYANTHTGITEWAPSINRSLTRSASYTAFTNSNT* 587
            S +N  +T     S S+ N  TT  S   T T  T   PS+  S++ ++SY A + S+  
Sbjct: 893  STSNSGSTSYSIPSSSSRNEGTTSYSSNITVTSST-LKPSLTSSVSTASSYIASSASSNT 951

Query: 588  Q*T*PAYYAS 617
              T P  ++S
Sbjct: 952  LSTEPKTFSS 961


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 312 WHAVC-PVAGRRHQLAAHSSTHLRAYSVARSQTW*SATNGANTGAQSESTTNSATTEISY 488
           W+ VC P AG R  +     +H     + ++      ++G+   + ++ TTNS+TT  S 
Sbjct: 62  WYEVCNPAAGTRGFVPV---SHFE--EIGKTVKSERDSDGSGQISFTDLTTNSSTTRSSI 116

Query: 489 ANTHTG 506
           +  H+G
Sbjct: 117 SELHSG 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,217,388
Number of Sequences: 5004
Number of extensions: 63750
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)