Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_L10
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   2.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   8.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   8.1  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -2

Query: 139 IVYFLHIKDKHKTSLHSSHPMIFTYFPLVMSKITSPSLSTI 17
           +  FL++  +   +   + P++ TYF  +M  + S  +STI
Sbjct: 273 LTVFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTI 313


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 533 VNTWSPFCNPCM 498
           VN WS FC+ C+
Sbjct: 354 VNLWSGFCSQCI 365


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 186 SRSKRSEIHLAIFVTGLFTFFTL 118
           +RSKR ++   IF   +F FF L
Sbjct: 410 TRSKRIDVISRIFFPIVFAFFNL 432


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 186 SRSKRSEIHLAIFVTGLFTFFTL 118
           +RSKR ++   IF   +F FF L
Sbjct: 410 TRSKRIDVISRIFFPIVFAFFNL 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,579
Number of Sequences: 438
Number of extensions: 4667
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)