Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_L09
         (1004 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.009
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    36   0.012

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.9 bits (79), Expect = 0.009
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = -3

Query: 525 GGXXPPPPXXXGGGGGXXXPXXPPPKNFXGGGXXFXP 415
           GG  PPPP     G G   P  PPP    GG   + P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 33.9 bits (74), Expect = 0.036
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = -3

Query: 522 GXXPPPPXXXGGGGGXXXPXXPPPKNFXGGGXXFXPP 412
           G  PPPP   G  G    P  PPP     GG  +  P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = -2

Query: 514 PPXXPXXXGGGGXKXPPXXPPKKFFXGGXXFXPPP 410
           PP  P    G G   PP  PP     G   + P P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 35.5 bits (78), Expect = 0.012
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = -3

Query: 585 GGXFFXKKXXGGGXFXXGGGGGXXPPPPXXXGGGGG 478
           G  F  +   GGG    GGG G  PP P   GG GG
Sbjct: 177 GNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGG 212



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 20/64 (31%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
 Frame = -3

Query: 612 PPXKXXXXXGGXFFXKKXXGGGXFXXGGGGGXXPPPPXXXGGG----GGXXXPXXPPPKN 445
           PP        G F  +    GG    GGG G     P   GGG    GG        P  
Sbjct: 201 PPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGG 260

Query: 444 FXGG 433
           F GG
Sbjct: 261 FGGG 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,835,693
Number of Sequences: 5004
Number of extensions: 23935
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 521265546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)