Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_L06
         (971 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.2  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   4.2  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   4.2  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   5.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.5  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   9.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 689 PPPPPXXGGXXXF 651
           PPPPP  GG   F
Sbjct: 376 PPPPPIRGGEWTF 388


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 691  PPPPPPXXGGXXF 653
            PPPPPP   G  +
Sbjct: 1356 PPPPPPPSSGQAY 1368



 Score = 22.6 bits (46), Expect = 5.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 507  PPPPPPXXG 481
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 293 EFSPPGSQKIXXXXPXPPF 349
           E  PPG + +    P PPF
Sbjct: 68  EHKPPGPKDLVYLEPSPPF 86


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 293 EFSPPGSQKIXXXXPXPPF 349
           E  PPG + +    P PPF
Sbjct: 69  EHKPPGPKDLVYLEPSPPF 87


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -3

Query: 690 PPPPPRXRGAXXFFFFXXXGGGGGXPXPPXGG 595
           PP PP  + A  +         GG P PP  G
Sbjct: 107 PPIPPEIQRALEWNAAHPEEDDGGQPRPPGRG 138


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 691 PPPPPPXXGG 662
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 516 KXXPPPPPP 490
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 112 LTNLDXKGVYSQVKAQTKLXXGRNFPLKPP 23
           L N     V+S+   +T +     +PL+PP
Sbjct: 99  LWNFPMISVFSRQDIETIIRRNSRYPLRPP 128


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 598  PXXGGXXPPPPP 633
            P  G   PPPPP
Sbjct: 1852 PVSGSPEPPPPP 1863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,206
Number of Sequences: 438
Number of extensions: 6050
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32048835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)