Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_L05
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    31   0.29 
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    27   3.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.5  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    26   6.2  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   6.2  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   8.2  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    26   8.2  
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    26   8.2  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -2

Query: 181 GSRLQVSCYVCGDASHVASGCSM--RFNSCSLRAIRRYKSYYVD*GSLEY 38
           G R  ++CY CG   H A  C+M  +  SC     R ++      G L Y
Sbjct: 111 GHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRSFECQQASDGQLCY 160



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 193 PWAPGSRLQVSCYVCGDASHVASGC 119
           P +P  R    CY CG   H+A  C
Sbjct: 74  PSSPNPRQGAECYKCGRVGHIARDC 98


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 573 KTFYHHANFLPQQILPATTQTTILRVPPLLHDVTLTLRKPTANTCQART 719
           +TF HHAN  P++IL    +    R    L    + ++K   N    +T
Sbjct: 13  RTFAHHANLTPRKILHDLPEAAHARKQIPLRPGVILVKKGMTNAWDEKT 61


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +1

Query: 586  TMQTSYRNKSYQPPRKLQFYGFHLSYTMLLSH*GSQPRTLVKHAQART 729
            TM  + ++K     RKL+    HL +  L++H   QP    +HAQ RT
Sbjct: 1356 TMLKTSQSKDSSSLRKLRATCLHLLFASLVAHKFDQP----QHAQTRT 1399


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 265 KGVATDTALKLFSIFQQNLNNLLIPWAPGSRLQVSC 158
           K +A      +   F   L  L++PWA GS   +SC
Sbjct: 275 KAIAAKPISAMKGYFAGGLAWLIVPWAMGSAAALSC 310


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -2

Query: 325  LSKFFSVEAAISAENLGIVPKGVATDTALKLFSIFQQNLNNLLIPW 188
            L+ F ++ +++    LGI  K ++  T + +  ++Q+ +NN    W
Sbjct: 1335 LTCFNTLFSSLCVIGLGIFEKDLSASTVIAVPELYQKGINNEAFNW 1380


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 333 PKRSRSFFPWKLPFLRKTWASCRRVLRQILLSNFFRYSSK 214
           P+   + + WK+ +   TW   R    QI  S+ + YS+K
Sbjct: 391 PEMPTTIYFWKI-YSAPTWMLARPKFSQINTSHLYNYSTK 429


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 83  YRSKRTRIKAHGTPRSYMTRITAHVTADLQARAGSPRNEEVVQ 211
           +RSKR   +A   P   +  ++A + +D+     SP N  + Q
Sbjct: 5   FRSKRGMARAEFQPTDTLAMLSAKILSDILKNDYSPENVSLCQ 47


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -3

Query: 438 HGLPILEPPRSGCTCARARRLVGDLKRKNEDPDKEPKRSR 319
           H LP++    S C     R  + D+   +EDP     R R
Sbjct: 241 HKLPVIASTGSACKSDPTRVNIADISATSEDPLSRATRRR 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,234,769
Number of Sequences: 5004
Number of extensions: 61718
Number of successful extensions: 229
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)