Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_L05
         (881 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117532-1|CAB55981.1|  845|Homo sapiens hypothetical protein pr...    31   5.5  
BC021176-1|AAH21176.1|  166|Homo sapiens zinc finger, CCHC domai...    30   9.7  
AK096940-1|BAC04906.1|  226|Homo sapiens protein ( Homo sapiens ...    30   9.7  

>AL117532-1|CAB55981.1|  845|Homo sapiens hypothetical protein
           protein.
          Length = 845

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 302 SCHFCGKPGHRAEGCCDRYCSQTFFDIPAKPEQPPHSVGSRLSPASQLL 156
           SC+ CG  GHRA+ C         F+ P K    P   GSR + A + L
Sbjct: 790 SCYNCGATGHRAQDCKQ---PSMDFNRPGKRAPWPRPPGSRRTSAHKCL 835


>BC021176-1|AAH21176.1|  166|Homo sapiens zinc finger, CCHC domain
           containing 13 protein.
          Length = 166

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 169 QVSCYVCGDASHVASGCS 116
           QV CY CG+  HVA  CS
Sbjct: 127 QVKCYRCGEIGHVAINCS 144


>AK096940-1|BAC04906.1|  226|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39621 fis, clone SMINT2001158. ).
          Length = 226

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = +2

Query: 602 TATNLTSHHANYNFTGSTSLTRCYSHTEEANREHL---SSTHKHALHRKNLHPXAEPNTA 772
           T T+ ++H     FT +  +T   +HT      H    S TH H     + HP    +T 
Sbjct: 139 TYTHTSTHTHPLTFTHTYPITHPLTHTPTHTHTHALTHSHTHIHTHMHSHTHPLTHTSTH 198

Query: 773 XXPXTN 790
             P T+
Sbjct: 199 THPHTH 204


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,230,810
Number of Sequences: 237096
Number of extensions: 2413954
Number of successful extensions: 11245
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11241
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)