Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_L04
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    31   0.27 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.4  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.5  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   2.5  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    27   3.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.3  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   5.8  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    26   5.8  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    26   5.8  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   7.7  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    26   7.7  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = +3

Query: 36  DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 215
           DI   FD + H+ LI  L +     R + +IR  L N  +      T +R ++   G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423

Query: 216 GSALSP 233
           GS +SP
Sbjct: 424 GSIVSP 429


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 37/121 (30%), Positives = 46/121 (38%), Gaps = 14/121 (11%)
 Frame = +2

Query: 293 SSPMTPPSTTRVGRRRCFIDDFRPQLPPWDS---------GSGSGASTLTPRKAQ-RCYS 442
           S P  PP ++RV       +  RP  PP  S         G+GS  S+L P     R  +
Sbjct: 288 SKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNA 347

Query: 443 KGVALRTPR*ASLSRLGASTPPPPPFAQSRCT---TSPYRGPRR-SNI*ASPSTVG*HSA 610
            G     P+       G S PPPPP   +  T     P    R  SN  A P  +   SA
Sbjct: 348 AGSIPLPPQ-------GRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA 400

Query: 611 P 613
           P
Sbjct: 401 P 401


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 557 PRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS*DVSTR 667
           P  SN  +  ST   H  P+S+R +++PP++ ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 190 VTSQPESRKAPPSPRLLFSLYINDIPRSPETHLALFA 300
           + +QP+  K  PSP   F L+   + RS ET+L  +A
Sbjct: 47  IDTQPKEEKPEPSPSSPFGLFAYVVKRS-ETYLIQYA 82


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 570 FDLRGPRYGLVVHRDWANGGGGGVDAPSRERD 475
           F+L    Y L    +W  GG  GV AP+ E D
Sbjct: 160 FELDVSNYPLPEGEEWMVGGSFGVMAPNNEED 191


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 35/140 (25%), Positives = 49/140 (35%), Gaps = 10/140 (7%)
 Frame = +2

Query: 155 PISSRGNAFPAP-SRHSRSPARLRPLPXYYSVCIL-TIYPGLRRPIWRSSPMTPPSTTRV 328
           P S+   + P P +  S +     PLP   + C   T  P         +P  PP++T  
Sbjct: 253 PTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTS- 311

Query: 329 GRRRCFIDDFRPQLPPWDSGSGSGASTLTPRKAQRCYSK--------GVALRTPR*ASLS 484
                      P  P   S +G+ +S L P  +  C +              TP     S
Sbjct: 312 -------STSTPPPPASTSSTGTSSSPL-PSTSTSCTTSTSIPPTGNSTTPVTPTVPPTS 363

Query: 485 RLGASTPPPPPFAQSRCTTS 544
               STPPPP    S  T+S
Sbjct: 364 TSSTSTPPPPASTSSTGTSS 383


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 618 DVGAECHPTVEGDA*IFDLRGPRYGLVVHRDWANG 514
           DV A C  +++     +DLR PR+ +    DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 146 VRQVVSYDEHEPVWHSHV 93
           +R+ V YDE EP+W S +
Sbjct: 436 IRECVRYDEDEPLWISEL 453


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +1

Query: 454 PPNTTLSIPLPTRRVNTPAPAVRPITMYDQPIPWAPKVKYLGVT 585
           PP  + + P PT   NTPA      T+    IP  P V  +G T
Sbjct: 211 PPGFSPATPAPTSAANTPA------TIAATSIPPVPNVPLVGAT 248


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
 Frame = +1

Query: 265 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 435
           P++ +   +LF+D++ +  S    +L          ++  +   F++ +       ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385

Query: 436 LFKRGRPPNTTLSIPLPTRRVNTPAPAVRP 525
           L K+ RP       PLP    + P+  VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 388 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPL 483
           F+ W+    P+ S  +L ++G PP + LS  L
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSEL 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,743,017
Number of Sequences: 5004
Number of extensions: 87453
Number of successful extensions: 291
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)