Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_L02
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   221   8e-59
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   221   1e-58
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   6.0  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  221 bits (541), Expect = 8e-59
 Identities = 106/206 (51%), Positives = 138/206 (66%)
 Frame = +2

Query: 35  MSHRKFSAPRSWVYGILSQKEXXXXXXXXXXXXXXXXXXXXXHLTAFIGYKAGMTHVVRE 214
           MSH KF  PR    G L +K                      HLTAF+GYKAGMTH+VR+
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPV-HLTAFLGYKAGMTHIVRD 59

Query: 215 PDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFY 394
            DRPGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFY
Sbjct: 60  LDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFY 119

Query: 395 KNWYXXXXXXXXXXXXXWQDELGRKSXEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAH 574
           KNW+             + +    +S  ++ +++ +YCSVVRV+AHTQ++     QKKAH
Sbjct: 120 KNWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAH 177

Query: 575 IMEIXLXGGTIEDKVKWAREHLEKPI 652
           +MEI + GG++ DKV+WAREH EK +
Sbjct: 178 LMEIQVNGGSVADKVEWAREHFEKTV 203



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = +1

Query: 742 GTQRSYPGKTHKGLRKVACIGAWH 813
           GT+R  P KTH+GLRKVACIGAWH
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWH 256



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 23/67 (34%), Positives = 32/67 (47%)
 Frame = +3

Query: 657 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR*DTQGS*ESCLHWSXASSRVSFTV 836
           + S F Q+EMID I            +RW TK+LPR   +G  +     +   + V +TV
Sbjct: 205 IKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTV 264

Query: 837 XRAGXKG 857
            RAG  G
Sbjct: 265 ARAGNAG 271


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  221 bits (540), Expect = 1e-58
 Identities = 105/206 (50%), Positives = 138/206 (66%)
 Frame = +2

Query: 35  MSHRKFSAPRSWVYGILSQKEXXXXXXXXXXXXXXXXXXXXXHLTAFIGYKAGMTHVVRE 214
           MSH KF  PR    G L +K                      HLTAF+GYKAGMTH+VR+
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPV-HLTAFLGYKAGMTHIVRD 59

Query: 215 PDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFY 394
            DRPGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFY
Sbjct: 60  LDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFY 119

Query: 395 KNWYXXXXXXXXXXXXXWQDELGRKSXEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAH 574
           KNW+             + +    +S  ++ +++ +YCSVVRV+AHTQ++     QKKAH
Sbjct: 120 KNWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAH 177

Query: 575 IMEIXLXGGTIEDKVKWAREHLEKPI 652
           +MEI + GG++ DKV+WAREH EK +
Sbjct: 178 LMEIQVNGGSVADKVEWAREHFEKTV 203



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = +1

Query: 742 GTQRSYPGKTHKGLRKVACIGAWH 813
           GT+R  P KTH+GLRKVACIGAWH
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWH 256



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 23/67 (34%), Positives = 32/67 (47%)
 Frame = +3

Query: 657 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR*DTQGS*ESCLHWSXASSRVSFTV 836
           + S F Q+EMID I            +RW TK+LPR   +G  +     +   + V +TV
Sbjct: 205 IKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTV 264

Query: 837 XRAGXKG 857
            RAG  G
Sbjct: 265 ARAGNAG 271


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 312 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 464
           TL    DYA+   S +S+ LK   V+   T T  RRR +    RN  + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,425,256
Number of Sequences: 5004
Number of extensions: 67073
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)