Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_L02
         (857 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   209   2e-54
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   208   6e-54
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847...    29   3.6  
01_05_0125 - 18382402-18382761,18382863-18383036                       28   8.3  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  209 bits (511), Expect = 2e-54
 Identities = 102/208 (49%), Positives = 134/208 (64%), Gaps = 1/208 (0%)
 Frame = +2

Query: 35  MSHRKFSAPRSWVYGILSQKEXXXXXXXXXXXXXXXXXXXXXHLTAFIGYKAGMTHVVRE 214
           MSHRKF  PR    G L +K                      HLT+F+GYKAGMTH+VRE
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPC-HLTSFVGYKAGMTHIVRE 59

Query: 215 PDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFY 394
            ++PGSK++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFY
Sbjct: 60  VEKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFY 119

Query: 395 KNWYXXXXXXXXXXXXXWQDELGRKSXEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKA 571
           KNW              +  + G+K  +   +KM +Y S+VRVIAHTQ++ +K  +QKKA
Sbjct: 120 KNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKA 179

Query: 572 HIMEIXLXGGTIEDKVKWAREHLEKPIP 655
           H+MEI + GGTI DKV +  +  EK IP
Sbjct: 180 HLMEIQINGGTIADKVDYGYKFFEKEIP 207



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 25/67 (37%), Positives = 34/67 (50%)
 Frame = +3

Query: 657 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR*DTQGS*ESCLHWSXASSRVSFTV 836
           VD+VF +DEMID I            +RW   +LPR   +G  +     +   +RVS+TV
Sbjct: 208 VDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTV 267

Query: 837 XRAGXKG 857
            RAG  G
Sbjct: 268 ARAGQNG 274



 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 760 PGKTHKGLRKVACIGAWH 813
           P KTH+GLRKVACIGAWH
Sbjct: 242 PRKTHRGLRKVACIGAWH 259


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  208 bits (507), Expect = 6e-54
 Identities = 102/208 (49%), Positives = 133/208 (63%), Gaps = 1/208 (0%)
 Frame = +2

Query: 35  MSHRKFSAPRSWVYGILSQKEXXXXXXXXXXXXXXXXXXXXXHLTAFIGYKAGMTHVVRE 214
           MSHRKF  PR    G L +K                      HLT+F+GYKAGMTH+VRE
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPC-HLTSFVGYKAGMTHIVRE 59

Query: 215 PDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFY 394
            ++PGSK++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFY
Sbjct: 60  VEKPGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFY 119

Query: 395 KNWYXXXXXXXXXXXXXWQDELGRKSXEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKA 571
           KNW              +  + G+K  +   +KM +Y SVVRVI HTQ++ +K  +QKKA
Sbjct: 120 KNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKA 179

Query: 572 HIMEIXLXGGTIEDKVKWAREHLEKPIP 655
           H+MEI + GGTI DKV +  +  EK IP
Sbjct: 180 HLMEIQINGGTIADKVDYGYKFFEKEIP 207



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 25/67 (37%), Positives = 34/67 (50%)
 Frame = +3

Query: 657 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR*DTQGS*ESCLHWSXASSRVSFTV 836
           VD+VF +DEMID I            +RW   +LPR   +G  +     +   +RVS+TV
Sbjct: 208 VDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTV 267

Query: 837 XRAGXKG 857
            RAG  G
Sbjct: 268 ARAGQNG 274



 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 760 PGKTHKGLRKVACIGAWH 813
           P KTH+GLRKVACIGAWH
Sbjct: 242 PRKTHRGLRKVACIGAWH 259


>01_06_0083 +
           26283492-26283756,26284255-26284467,26284620-26284771,
           26284884-26285157,26285277-26285485
          Length = 370

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 478 KRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 588
           +RF  +DPLL CC  H P+   A  T  +  + +G+P
Sbjct: 299 RRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333


>01_05_0125 - 18382402-18382761,18382863-18383036
          Length = 177

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 386 DVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 282
           ++ +L    PPR ST R+V E   C+ + R + +E
Sbjct: 47  ELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,213,864
Number of Sequences: 37544
Number of extensions: 476401
Number of successful extensions: 1059
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)