Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_K23
         (899 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.94 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   5.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   5.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   5.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 460 DRMRVANGVPSDVLWGMP 407
           + MR+ NG P+D LW +P
Sbjct: 375 NEMRLRNGCPADWLWIVP 392


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 20/99 (20%), Positives = 38/99 (38%)
 Frame = +1

Query: 91  NTIHRDAITAPLVETAINNFRHKLKLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHK 270
           NTIH +           NN  +  KLY   +N + IP+   + + V      P P     
Sbjct: 87  NTIHNNNYKYNYNNNNYNNNNYNKKLYYNIINIEQIPV--PVPVPVYCGNFPPRPMGPWI 144

Query: 271 AIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNF 387
           +++  +    + ++        ++ P  ++    LNP F
Sbjct: 145 SMQEQI--PRFRYIGPPTPFPRFIPPNAYRLRPPLNPRF 181


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 20/99 (20%), Positives = 38/99 (38%)
 Frame = +1

Query: 91  NTIHRDAITAPLVETAINNFRHKLKLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHK 270
           NTIH +           NN  +  KLY   +N + IP+   + + V      P P     
Sbjct: 87  NTIHNNNYKYNYNNNNYNNNNYNKKLYYNIINIEQIPV--PVPVPVYCGNFPPRPMGPWI 144

Query: 271 AIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNF 387
           +++  +    + ++        ++ P  ++    LNP F
Sbjct: 145 SMQEQI--PRFRYIGPPTPFPRFIPPNAYRLRPPLNPRF 181


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 610 PDLYSYTIKDDQLVYTLEGNATGNYT 687
           PD+  Y   D     TL   AT NYT
Sbjct: 109 PDIVLYNNADGNFEVTLATKATLNYT 134


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +3

Query: 60  GFHQFSRYSRQHHPPRRHNGSPGGNRHQ 143
           GF   S +  QHHP + H        HQ
Sbjct: 310 GFLPPSYHPHQHHPSQYHPHRGSSPHHQ 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,671
Number of Sequences: 438
Number of extensions: 6130
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)