Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_K08
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    29   0.66 
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   3.5  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    27   4.7  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    26   6.2  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    26   8.2  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    26   8.2  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    26   8.2  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   8.2  

>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +2

Query: 155 PDPYRGTSRPKSWPRHTDGEHSPRLGNGHPARRLSIDGGVLRVVW 289
           P P   TSRP ++  + D   +         RRL   GGVLRV W
Sbjct: 39  PIPRTRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEW 83


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -1

Query: 384 LQHRHQCLERALTSGRSSAELLQQA 310
           LQH+ QCLE AL    S   L QQA
Sbjct: 876 LQHKRQCLELALQKINSLVILEQQA 900


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 23/91 (25%), Positives = 36/91 (39%)
 Frame = +2

Query: 356 RSRHWCLCWRHGRTGDTVSSPFASPRSFRGMDASGGICGESAEGSHIRAATSAGTRTMTP 535
           R R+    WR      T S   A+  SF G   +        EG   R   S G+ ++  
Sbjct: 210 RPRNLDAQWRPSSLSQTNSPTHAANPSFPGTIVTHNTSNFRPEGGGHRHRRSTGSLSVGS 269

Query: 536 STRXKRAHGWEHPRRNLVAVLGQDLSLRAIV 628
           S     + G  +PR+NL +      S+ A++
Sbjct: 270 SGSGFSSGGSGNPRKNLFSPYLPQSSIPALL 300


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 116 GTVPSLRMWPVPSPDPYRGTSR 181
           GT+ SL +WP+ SPD +    R
Sbjct: 59  GTILSLYIWPILSPDLFFANQR 80


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -3

Query: 499 PDVAPFRRLSTDTSRS 452
           P V P RR STDTSRS
Sbjct: 879 PKVGPPRRQSTDTSRS 894


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +3

Query: 201 IPTENTVLDSGTDTRPV--GC 257
           IP ENT++  G +TRP   GC
Sbjct: 492 IPDENTIISLGLNTRPTFFGC 512


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 229 ESRTVFSVGMSRPRFRPRGPSVRIRRGHR 143
           E   +FS   S+P F+PR P+  I R  R
Sbjct: 427 ECAFLFSPNASQPHFQPRAPTFGIPRNVR 455


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +3

Query: 201 IPTENTVLDSGTDTRPV--GC 257
           IP ENT++  G +TRP   GC
Sbjct: 492 IPDENTIISLGLNTRPTFFGC 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,252,312
Number of Sequences: 5004
Number of extensions: 69747
Number of successful extensions: 217
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)