Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_J24
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    27   0.30 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   4.9  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    22   6.5  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 591 AAHHSS*PAYPGGHSQVPAESGP 659
           AA  S+ P+YPGG S  P+ S P
Sbjct: 74  AAITSTSPSYPGGGSSSPSPSSP 96


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 307 IGAKFTNAGIAADEFAQPDLNLSYDGKRDR 396
           IGA  TNA IA D ++   +    DGK  R
Sbjct: 132 IGAAITNAAIAYDRYS--TIARPLDGKLSR 159


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 796 NSAPPRVRRVPQT 758
           NS PPR+  VP T
Sbjct: 88  NSQPPRITSVPNT 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,695
Number of Sequences: 438
Number of extensions: 4275
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)