Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_I18
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.063
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.11
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.78
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 28 1.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 4.2
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.2
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 5.5
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.7 bits (71), Expect = 0.063
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 551 PPPPPPPXXXXKKNPPXPP 495
PPPPPPP PP PP
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
Score = 29.5 bits (63), Expect = 0.59
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 551 PPPPPPPXXXXKKNPPXPP 495
PPPPPPP + P PP
Sbjct: 9 PPPPPPPPGFEPPSQPPPP 27
Score = 29.1 bits (62), Expect = 0.78
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 551 PPPPPPPXXXXKKNPPXPP 495
PPPPPP + PP PP
Sbjct: 11 PPPPPPGFEPPSQPPPPPP 29
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 551 PPPPPPPXXXXKKNPPXP 498
PPPPPPP K+ P
Sbjct: 24 PPPPPPPGYVKKRKNKTP 41
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.11
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 551 PPPPPPPXXXXKKNPPXPP 495
PPPPPPP PP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779
Score = 31.1 bits (67), Expect = 0.19
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 551 PPPPPPPXXXXKKNPPXPP 495
PPPPPPP PP PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 551 PPPPPPPXXXXKKNPPXPP 495
PPPPPP PP PP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -3
Query: 547 PPPPPXXGGXKKTPPXP 497
PPP P GG PP P
Sbjct: 752 PPPAPIMGGPPPPPPPP 768
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.78
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = -2
Query: 635 KXPPPXXXXXXXXXXXXXXXXXXXXXXXPPPPPPPXXXXKKNPPXPP 495
K PPP PPPPPPP + P PP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -2
Query: 551 PPPPPPPXXXXKKNPPXPP 495
PPP PPP +PP P
Sbjct: 253 PPPIPPPSNGTVSSPPNSP 271
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -2
Query: 548 PPPPPPXXXXKKNPPXPPL 492
PP PPP + P PPL
Sbjct: 388 PPAPPPAIPGRSAPALPPL 406
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 551 PPPPPPPXXXXKKNPPXPPL 492
PPPPPPP +P PL
Sbjct: 370 PPPPPPPPELLNHSPKSRPL 389
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 548 PPPPPPXXXXKKNPPXPPL 492
PPPPPP P PPL
Sbjct: 5 PPPPPPAPAPAAAAPAPPL 23
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 548 PPPPPPXXXXKKNPP 504
PPPPPP K PP
Sbjct: 1882 PPPPPPMALPKAGPP 1896
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 551 PPPPPPPXXXXKKN 510
PPPPPPP KK+
Sbjct: 1096 PPPPPPPAEVEKKD 1109
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 548 PPPPPPXXXXKKNPPXPPL 492
PP P P K +PP PP+
Sbjct: 731 PPTPAPTPAVKHHPPPPPV 749
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,998
Number of Sequences: 5004
Number of extensions: 23705
Number of successful extensions: 254
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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