Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_I11
         (921 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                26   0.55 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   5.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   5.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.8 bits (54), Expect = 0.55
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = +2

Query: 704 HQSHHEPAKRLLKEHSRXXLTRGDSYQQYX*LLLSRXIGFQTXXNP 841
           H  HH   + L   H R   T  +SY  Y   + +    F T   P
Sbjct: 351 HHHHHHQTQSLQHLHYRQPPTLSESYSSYVNSMYASGAQFATPCTP 396



 Score = 25.4 bits (53), Expect = 0.73
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 434 HRTSLEAHQNGAETTRGQPAPPAHH 508
           HR S   HQ+G  T      PP HH
Sbjct: 329 HRGSSPHHQHGNHTMGPTMGPPHHH 353


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 447  KDVRCAPFACDGPRPSWKP 391
            +DVRCA       + SW+P
Sbjct: 1116 EDVRCAALTSQSLQVSWQP 1134


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 447  KDVRCAPFACDGPRPSWKP 391
            +DVRCA       + SW+P
Sbjct: 1112 EDVRCAALTSQSLQVSWQP 1130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,939
Number of Sequences: 438
Number of extensions: 4420
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)