Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_I03
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 208 6e-55
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo... 34 0.023
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.64
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 29 0.64
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.85
SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo... 28 1.5
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 28 1.5
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 27 2.6
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.6
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy... 27 4.5
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.5
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc... 26 7.9
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 208 bits (509), Expect = 6e-55
Identities = 94/126 (74%), Positives = 111/126 (88%), Gaps = 1/126 (0%)
Frame = +2
Query: 242 DFKIEP-SESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFIN 418
DF I+P + S K+DTA WPLLLKNFD+L VRT HYTP+P GN+PLKRPI++YV SG IN
Sbjct: 9 DFMIKPEATSASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVIN 68
Query: 419 VDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 598
+DKP+NPSSHEVV+W+K+IL+VEKTGHSGTLDPKVTGCLI+C DRATRLVKSQQ+AGKEY
Sbjct: 69 LDKPANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEY 128
Query: 599 VARFQL 616
V +L
Sbjct: 129 VCVLRL 134
Score = 60.1 bits (139), Expect = 4e-10
Identities = 28/56 (50%), Positives = 37/56 (66%)
Frame = +3
Query: 606 VFNLHSAVENIQKVTQGLEKLRGALFQXXPLISXVKRQLRVRTVYDSXLLDSTRTR 773
V LH +VE + V +E L GALFQ PLIS VKRQLR+R++Y+S L++ R
Sbjct: 131 VLRLHDSVEGERNVASAIETLTGALFQRPPLISAVKRQLRIRSIYESKLIEFDNER 186
>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 34.3 bits (75), Expect = 0.023
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 488 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVARFQLAFSRREYSKS 646
K GH GTLDP +G L+V + T+ + S + K Y A S Y +
Sbjct: 107 KIGHGGTLDPLASGVLVVGLGTGTKQLSSLLSCMKTYRATALFGCSTDTYDSA 159
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.5 bits (63), Expect = 0.64
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 395 YVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHS 502
++K + +D+P+N E V+W++ L E GH+
Sbjct: 436 FIKPTLMMLDEPTNHLDLEAVAWLEEYLTHEMEGHT 471
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 29.5 bits (63), Expect = 0.64
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 296 PLLLKNFDRLNVRTNHYTPLPFGNSPLKRP 385
P+LL + N N TP PFG SP+ P
Sbjct: 259 PILLSPLNYQNSSLNPSTPSPFGGSPVMHP 288
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.1 bits (62), Expect = 0.85
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +2
Query: 311 NFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHE 451
++DR + + NH +P P +P K P+ + ++ N D + S+ +
Sbjct: 158 DYDRRSPKRNHRSPSPVSFAPQKSPVENETETNVDNGDTKISESNEK 204
>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 28.3 bits (60), Expect = 1.5
Identities = 22/63 (34%), Positives = 26/63 (41%)
Frame = +2
Query: 413 INVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGK 592
IN D P P SHE+V IL SG + P+ CI+ K N G
Sbjct: 76 INEDDPQEPKSHEIV-----ILLASDGRSSGNMAPETFN---QCIENRINYAK-HHNYGF 126
Query: 593 EYV 601
EYV
Sbjct: 127 EYV 129
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 299 LLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSG 409
+LL+ + ++T Y P+ G LKRP+SDY+ G
Sbjct: 1 MLLRPKTKFEIKT--YKPISPGLRHLKRPVSDYLWKG 35
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 27.5 bits (58), Expect = 2.6
Identities = 24/81 (29%), Positives = 35/81 (43%)
Frame = +2
Query: 422 DKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYV 601
+KP PS H ++S+ K+E T ++ T K G IV R S +N GKE V
Sbjct: 563 EKPVKPSKHNIMSFCILQGKIEVTVNATTFRMKKDGVFIV--PRGN--YYSIKNIGKEAV 618
Query: 602 ARFQLAFSRREYSKSHTGLGE 664
R + G+G+
Sbjct: 619 -RLYYTHATDTLENKRRGIGD 638
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 290 KRCPASSRSPKVRF*SRQLSEKLPTKHHPCFFSFSSLKVCRYRAAVPPSF 141
KRC A+++ ++ R+L E LP K P S S+ Y +++ P F
Sbjct: 23 KRC-ANNQIEELMVRIRELRESLPNKQTPISMSMSTRLSPMYTSSLTPRF 71
>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 324 KRSKFFNNKGQ*AVSSFFT 268
K+SK+F+ +G +SSFFT
Sbjct: 273 KKSKYFSGEGMTKISSFFT 291
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 4.5
Identities = 31/118 (26%), Positives = 48/118 (40%)
Frame = +2
Query: 113 VRKDTC*FIKMTEVLQPGNDTLSEKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAY 292
+++D + ++ G S K +K NK ++ G+ PS SV +++
Sbjct: 136 MKEDITPVVNTSKQSSTGTQEESSKPEKSNKL-LAKSTLSLYGNQAFNPS-SVLPSNSSS 193
Query: 293 WPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWI 466
P ++ NV Y P F SPLK S N+ PS PSS VS +
Sbjct: 194 TP----KENKKNVNKETYQPNTFRRSPLKNDTGSVELS---NLYMPSPPSSALPVSLV 244
>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +2
Query: 500 SGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVARFQLAFS 625
S +P C + CI+ + +K + GK+ AR +A++
Sbjct: 248 STAANPITDACAVKCIELVNKYLKRAVDNGKDEEARDNMAYA 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,505,907
Number of Sequences: 5004
Number of extensions: 74187
Number of successful extensions: 213
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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