Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_I03
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.52 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   8.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 509 ACPNDQSFRLLKYVLSMKLLRGSWGCSVCR 420
           A P D +  + +YV+  K+ +GSW   + R
Sbjct: 897 AAPYDGNSPIKRYVIEYKISKGSWETDIDR 926



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +2

Query: 362  GNSPLKRPISDY-VKSGF--INVDKPSNPSSHEVVSWI 466
            GNSP+KR + +Y +  G    ++D+   P S + V+ +
Sbjct: 902  GNSPIKRYVIEYKISKGSWETDIDRVLVPGSQQNVAGV 939


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 317 RSFSTTKASKRCPASSRSP 261
           + FS++   +R P+SSRSP
Sbjct: 26  KRFSSSIVDRRSPSSSRSP 44


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 4   WIWPSIVLYFXSSFNKQCPI 63
           W+W S   +F   F+  CP+
Sbjct: 414 WMWLSCSSFFQQFFHCYCPV 433


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +2

Query: 434 NPSSHEVVSWIKRI 475
           +P +H++  W+KR+
Sbjct: 335 SPQTHKMAPWVKRV 348


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +2

Query: 434 NPSSHEVVSWIKRI 475
           +P +H++  W+KR+
Sbjct: 335 SPQTHKMAPWVKRV 348


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -2

Query: 681 IELHAASPS---PV*LFEYSLRLNAS*KRATYSLPAFCCDLTSL 559
           ++++A  P+   P+ ++E+S+  +     ATY +PA    L +L
Sbjct: 228 LKMYACCPNDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTL 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,496
Number of Sequences: 438
Number of extensions: 4971
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)