Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_I01
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399     29   4.8  
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742...    29   6.3  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    28   8.4  
01_07_0101 + 41086735-41086809,41088634-41088721,41089727-410899...    28   8.4  
01_06_0456 + 29521282-29522064                                         28   8.4  

>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
          Length = 146

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +3

Query: 378 RTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKP 557
           R +   +R E    G +RR   L  D +RG+ +      A H     AG    + RG KP
Sbjct: 59  RCIAEGRREEEEEVGRSRRGKDLDLDDMRGYGET-----ATHHGLRLAGREEVSPRGGKP 113

Query: 558 RVEQKGK 578
           RV+  G+
Sbjct: 114 RVDNGGR 120


>01_06_1406 -
           37073548-37073822,37073892-37074111,37074200-37074246,
           37074404-37074576,37075161-37075238,37075751-37075813,
           37075889-37075961,37076150-37076189,37076302-37076368,
           37076719-37078472,37079128-37079230,37080041-37080078,
           37080221-37080347,37081944-37082152
          Length = 1088

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 419 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 508
           +KR  P K PA S S+ LPG + + G  SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 498 PPQSNSPPGSVLEPDHAGVLNGDE 427
           P  +NS P +V +PD   +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762


>01_07_0101 +
           41086735-41086809,41088634-41088721,41089727-41089923,
           41090077-41090266,41090469-41090860,41091390-41091965
          Length = 505

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 436 RRRAFPPRHHSARLERNTVRSSKPEFS 356
           RR    P HHS  L R   RSS+ E S
Sbjct: 406 RRSVRSPNHHSPDLRREAARSSRAEVS 432


>01_06_0456 + 29521282-29522064
          Length = 260

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -3

Query: 478 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER 389
           AW+C  P +G+RG  +RRR  P    S R  R
Sbjct: 12  AWRCYSPASGARGGSRRRRRRPAGTTSRRCSR 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,110,682
Number of Sequences: 37544
Number of extensions: 510246
Number of successful extensions: 1241
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)