Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_H15
(879 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongatio... 34 0.78
AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription ... 34 0.78
AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongatio... 34 0.78
AF010404-1|AAC51735.1| 4957|Homo sapiens ALR protein. 33 1.0
AF010403-1|AAC51734.1| 5262|Homo sapiens ALR protein. 33 1.0
U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase prot... 32 2.4
BC110648-1|AAI10649.1| 661|Homo sapiens CHD3 protein protein. 32 2.4
AK127507-1|BAC87013.1| 130|Homo sapiens protein ( Homo sapiens ... 32 2.4
AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein. 32 2.4
X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein. 31 4.2
S81243-1|AAB36006.1| 684|Homo sapiens CHN protein. 31 4.2
D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan rec... 31 4.2
AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfam... 31 4.2
AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfam... 31 4.2
AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfam... 31 4.2
AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfam... 31 4.2
AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfam... 31 4.2
M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein. 30 9.6
M74027-1|AAA59875.1| 573|Homo sapiens mucin protein. 30 9.6
L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein. 30 9.6
BC117331-1|AAI17332.1| 346|Homo sapiens selenoprotein V protein. 30 9.6
AY324825-1|AAP85542.1| 346|Homo sapiens selenoprotein V protein. 30 9.6
>BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongation
regulator 1 protein.
Length = 1077
Score = 33.9 bits (74), Expect = 0.78
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +2
Query: 536 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPG-----LKPPLSSXAPSA 700
P+PA+S TST SS P T TT TS++ TP ++ P P +S P+
Sbjct: 266 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAP 324
Query: 701 YLTP 712
TP
Sbjct: 325 TATP 328
>AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription
factor CA150 protein.
Length = 1098
Score = 33.9 bits (74), Expect = 0.78
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +2
Query: 536 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPG-----LKPPLSSXAPSA 700
P+PA+S TST SS P T TT TS++ TP ++ P P +S P+
Sbjct: 266 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAR 324
Query: 701 YLTP 712
TP
Sbjct: 325 TATP 328
>AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongation
regulator 1 variant protein.
Length = 1081
Score = 33.9 bits (74), Expect = 0.78
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +2
Query: 536 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPG-----LKPPLSSXAPSA 700
P+PA+S TST SS P T TT TS++ TP ++ P P +S P+
Sbjct: 270 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAP 328
Query: 701 YLTP 712
TP
Sbjct: 329 TATP 332
>AF010404-1|AAC51735.1| 4957|Homo sapiens ALR protein.
Length = 4957
Score = 33.5 bits (73), Expect = 1.0
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Frame = +2
Query: 533 PPSPAISATSTRS--SNPRFHTPTTPDLTSISINPLTP---YXKEFAPGLKPPLSSXAPS 697
PP + A RS S+P P +P S S +PLTP + F P P +P
Sbjct: 1810 PPPESCCALPPRSLPSDPFSRVPVSPQSQSSSQSPLTPRPLSAEAFCPSPVTP-RFQSPD 1868
Query: 698 AYLTPSSLGMAKXGFAPL 751
Y P S ++ FAPL
Sbjct: 1869 PYSRPPSRPQSRDPFAPL 1886
>AF010403-1|AAC51734.1| 5262|Homo sapiens ALR protein.
Length = 5262
Score = 33.5 bits (73), Expect = 1.0
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Frame = +2
Query: 533 PPSPAISATSTRS--SNPRFHTPTTPDLTSISINPLTP---YXKEFAPGLKPPLSSXAPS 697
PP + A RS S+P P +P S S +PLTP + F P P +P
Sbjct: 2115 PPPESCCALPPRSLPSDPFSRVPVSPQSQSSSQSPLTPRPLSAEAFCPSPVTP-RFQSPD 2173
Query: 698 AYLTPSSLGMAKXGFAPL 751
Y P S ++ FAPL
Sbjct: 2174 PYSRPPSRPQSRDPFAPL 2191
>U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase protein.
Length = 2000
Score = 32.3 bits (70), Expect = 2.4
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +2
Query: 527 IKPPSPAISATSTRSSNPRFHTPTTPDLTS----ISINPLTPYXKEFAPGLKPPL 679
+ P A S S+R+S+P +PTTP+ ++ + P TP E G++ PL
Sbjct: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPL 1571
>BC110648-1|AAI10649.1| 661|Homo sapiens CHD3 protein protein.
Length = 661
Score = 32.3 bits (70), Expect = 2.4
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +2
Query: 527 IKPPSPAISATSTRSSNPRFHTPTTPDLTS----ISINPLTPYXKEFAPGLKPPL 679
+ P A S S+R+S+P +PTTP+ ++ + P TP E G++ PL
Sbjct: 178 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPL 232
>AK127507-1|BAC87013.1| 130|Homo sapiens protein ( Homo sapiens
cDNA FLJ45600 fis, clone BRTHA3020369. ).
Length = 130
Score = 32.3 bits (70), Expect = 2.4
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +3
Query: 465 SQCAGHPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQ 605
S C G PF S+ S P++S HP + +H Q P + QPPQ
Sbjct: 85 SNCIG-PFS-SYLTSVSLPHSSIHPSIHPSIHPSFIQTPSGLSQPPQ 129
>AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein.
Length = 1944
Score = 32.3 bits (70), Expect = 2.4
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +2
Query: 527 IKPPSPAISATSTRSSNPRFHTPTTPDLTS----ISINPLTPYXKEFAPGLKPPL 679
+ P A S S+R+S+P +PTTP+ ++ + P TP E G++ PL
Sbjct: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPL 1571
>X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein.
Length = 443
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>S81243-1|AAB36006.1| 684|Homo sapiens CHN protein.
Length = 684
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 93 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 144
>D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan
receptor protein.
Length = 626
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 443
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein.
Length = 1270
Score = 30.3 bits (65), Expect = 9.6
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +2
Query: 533 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSXAPSAYLTP 712
PP+ S +T + +P T TTP T+ +P+T + P + PS+ +T
Sbjct: 1027 PPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITT 1086
Query: 713 SS 718
++
Sbjct: 1087 TT 1088
>M74027-1|AAA59875.1| 573|Homo sapiens mucin protein.
Length = 573
Score = 30.3 bits (65), Expect = 9.6
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +2
Query: 533 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSXAPSAYLTP 712
PP+ S +T + +P T TTP T+ +P+T + P + PS+ +T
Sbjct: 310 PPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITT 369
Query: 713 SS 718
++
Sbjct: 370 TT 371
>L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein.
Length = 5179
Score = 30.3 bits (65), Expect = 9.6
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +2
Query: 533 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSXAPSAYLTP 712
PP+ S +T + +P T TTP T+ +P+T + P + PS+ +T
Sbjct: 1652 PPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITT 1711
Query: 713 SS 718
++
Sbjct: 1712 TT 1713
>BC117331-1|AAI17332.1| 346|Homo sapiens selenoprotein V protein.
Length = 346
Score = 30.3 bits (65), Expect = 9.6
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = +2
Query: 536 PSPAISATSTRSSNPRFHTPT-----TPDLTSISINPLTPYXKEFAPGLKPPLSSXAPS 697
PS A ++TS R+S P TPT TP T I LTP G P + + AP+
Sbjct: 10 PSSARTSTSVRASTPT-RTPTPLRTPTPVRTRTPIRTLTPVLTPSPAGTSPLVLTPAPA 67
>AY324825-1|AAP85542.1| 346|Homo sapiens selenoprotein V protein.
Length = 346
Score = 30.3 bits (65), Expect = 9.6
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = +2
Query: 536 PSPAISATSTRSSNPRFHTPT-----TPDLTSISINPLTPYXKEFAPGLKPPLSSXAPS 697
PS A ++TS R+S P TPT TP T I LTP G P + + AP+
Sbjct: 10 PSSARTSTSVRASTPT-RTPTPLRTPTPVRTRTPIRTLTPVLTPSPAGTSPLVLTPAPA 67
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,221,561
Number of Sequences: 237096
Number of extensions: 2531264
Number of successful extensions: 10030
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 9501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10000
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -