Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_H10
(968 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 44 4e-05
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 36 0.011
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 30 0.43
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.75
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.75
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 28 2.3
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 28 2.3
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 5.3
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 5.3
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 5.3
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 43.6 bits (98), Expect = 4e-05
Identities = 16/31 (51%), Positives = 16/31 (51%)
Frame = +3
Query: 609 PPPXXXXXXXXPPPPPXXXGXXXPPPPPPPP 701
PPP PPPPP PPPPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 42.7 bits (96), Expect = 7e-05
Identities = 16/31 (51%), Positives = 16/31 (51%)
Frame = +3
Query: 609 PPPXXXXXXXXPPPPPXXXGXXXPPPPPPPP 701
PP PPPPP G PPPPPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.5 bits (63), Expect = 0.75
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Frame = +3
Query: 609 PPPXXXXXXXXPPPPPXXXGXXXP----PPPPPPP 701
PPP P P P P PPPPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 570 PPXKXXGGGGGGXPPPXXXXXXXXPPPPP 656
PP GG PPP PPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 570 PPXKXXGGGGGGXPPPXXXXXXXXPPPPP 656
PP GG PPP PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 35.5 bits (78), Expect = 0.011
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = +3
Query: 642 PPPPPXXXGXXXP--PPPPPPP 701
PPPPP G P PPPPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 35.1 bits (77), Expect = 0.015
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = +3
Query: 603 GXPPPXXXXXXXXPPPPPXXXGXXXPPPPPPP 698
G PPP PPPPP PPPPPPP
Sbjct: 7 GNPPP--------PPPPPGFEPPSQPPPPPPP 30
Score = 24.6 bits (51), Expect(2) = 1.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 615 GGXXPPPPPPXF 580
G PPPPPP F
Sbjct: 7 GNPPPPPPPPGF 18
Score = 24.6 bits (51), Expect(2) = 1.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -1
Query: 614 GGXPPPPPPXXF 579
G PPPPPP F
Sbjct: 7 GNPPPPPPPPGF 18
Score = 22.2 bits (45), Expect(2) = 1.3
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -3
Query: 603 PPPPPPXFXXXXK 565
PPPPPP + K
Sbjct: 25 PPPPPPGYVKKRK 37
Score = 21.8 bits (44), Expect(2) = 1.7
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = -1
Query: 605 PPPPPPXXFXXXXK 564
PPPPPP + K
Sbjct: 24 PPPPPPPGYVKKRK 37
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 30.3 bits (65), Expect = 0.43
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +3
Query: 609 PPPXXXXXXXXPPPPPXXXGXXXPPPPPPPP 701
PPP P PPPPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.75
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +3
Query: 609 PPPXXXXXXXXPPPPPXXXGXXXPPPPPPP 698
PPP P PP G PPPP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.75
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +3
Query: 609 PPPXXXXXXXXPPPPPXXXGXXXPPPPPPP 698
PPP PP PPPPPPP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +3
Query: 609 PPPXXXXXXXXPPPPPXXXGXXXPPPPPPPP 701
PPP PP PPPPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +3
Query: 609 PPPXXXXXXXXPPPPPXXXGXXXPPPPPP 695
PPP P PP G PPPPPP
Sbjct: 341 PPPRSNAAGSIPLPPQ---GRSAPPPPPP 366
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/40 (30%), Positives = 12/40 (30%)
Frame = +3
Query: 570 PPXKXXGGGGGGXPPPXXXXXXXXPPPPPXXXGXXXPPPP 689
PP G P P PPPP PPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +3
Query: 591 GGGGGXPPPXXXXXXXXPPPPPXXXGXXXPPPPPPPP 701
G PPP PPP PP PPP
Sbjct: 357 GRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +3
Query: 573 PXKXXGGGGGGXPPPXXXXXXXXPPPPPXXXGXXXPPPPPPP 698
P G PPP PPP PP PPP
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
Score = 25.8 bits (54), Expect = 9.2
Identities = 14/42 (33%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Frame = +3
Query: 570 PPXKXXGGGGGGXPPPXXXXXXXXPP-PPPXXXGXXXPPPPP 692
PP + G PP PP PPP G P PP
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.9 bits (59), Expect = 2.3
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3
Query: 666 GXXXPPPPPPPP 701
G PPPPPPPP
Sbjct: 303 GGLPPPPPPPPP 314
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +3
Query: 570 PPXKXXGGGGGGXPPPXXXXXXXXPPPPPXXXGXXXPPPPPP 695
PP G PPP PPPP PPPP
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 250
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +3
Query: 570 PPXKXXGGGGGGXPPPXXXXXXXXPPPPPXXXGXXXPPPPPP 695
PP G PPP PPPP PPPP
Sbjct: 222 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 263
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +3
Query: 570 PPXKXXGGGGGGXPPPXXXXXXXXPPPPPXXXGXXXPPPPPP 695
PP G PPP PPPP PPPP
Sbjct: 235 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 276
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +3
Query: 570 PPXKXXGGGGGGXPPPXXXXXXXXPPPPPXXXGXXXPPPPPP 695
PP G PPP PPPP PPPP
Sbjct: 248 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 289
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +3
Query: 570 PPXKXXGGGGGGXPPPXXXXXXXXPPPPPXXXGXXXPPPPPP 695
PP G PPP PPPP PPPP
Sbjct: 261 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +3
Query: 570 PPXKXXGGGGGGXPPPXXXXXXXXPPPPPXXXGXXXPPPPPP 695
PP G PPP PPPP PPPP
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 315
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +3
Query: 570 PPXKXXGGGGGGXPPPXXXXXXXXPPPPPXXXGXXXPPPPPP 695
PP G PPP PPPP PPPP
Sbjct: 287 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 328
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +3
Query: 570 PPXKXXGGGGGGXPPPXXXXXXXXPPPPPXXXGXXXPPPPPP 695
PP G PPP PPPP PPPP
Sbjct: 300 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 5.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 678 PPPPPPPP 701
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 5.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 678 PPPPPPPP 701
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 5.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 678 PPPPPPPP 701
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 5.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 678 PPPPPPPP 701
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,971
Number of Sequences: 5004
Number of extensions: 42911
Number of successful extensions: 747
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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