Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_H09
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    40   3e-04
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    40   6e-04
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   0.007
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   0.088
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.49 
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   1.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    28   1.5  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    28   1.5  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    28   2.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.5  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   4.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   4.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 16/31 (51%), Positives = 16/31 (51%)
 Frame = -1

Query: 513 GXPPPPPPPPXXGXKKXPPPXPPFIXFXGGG 421
           G PPPPPPPP       PPP PP      GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = -1

Query: 513 GXPPPPPPPPXXGXKKXPPPXPPFIXFXGGGXF 415
           G PPPPPPP   G    PPP PP     GG  +
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRY 792



 Score = 34.3 bits (75), Expect = 0.023
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 507 PPPPPPPPXXGXKKXPPPXPPFIXFXGGGXFXP 409
           PPPPPP         PPP PP +   G   + P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 29.9 bits (64), Expect = 0.49
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -3

Query: 514 GXXPPPPPPPPXXXXKXTPPXXPLYXFXXGG 422
           G  PPPPPPP        PP  P      GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 504 PPPPPPPXXGXKKXPPPXP 448
           P PPP P  G    PPP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPP 768


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = -1

Query: 513 GXPPPPPPPPXXGXKKXPPPXPP 445
           G PPPPPPPP       PPP PP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 34.7 bits (76), Expect = 0.017
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 507 PPPPPPPPXXGXKKXPPPXPP 445
           PPPPPPP      + PPP PP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 29.9 bits (64), Expect = 0.49
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 514 GXXPPPPPPPPXXXXKXTPPXXP 446
           G  PPPPPPP        PP  P
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 507 PPPPPPPPXXGXKKXPPPXPPFI 439
           PPPPPP      +  PPP P ++
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYV 33


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 28.7 bits (61), Expect(2) = 0.007
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -1

Query: 513 GXPPPPPPPP 484
           G PPPPPPPP
Sbjct: 304 GLPPPPPPPP 313



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 514 GXXPPPPPPPP 482
           G  PPPPPPPP
Sbjct: 304 GLPPPPPPPPP 314



 Score = 26.2 bits (55), Expect(2) = 0.007
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 507 PPPPPPPPXXGXKKXPPPXP 448
           PPPPPPP     K    P P
Sbjct: 308 PPPPPPPSNDFWKDSNEPAP 327


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 505 PPPPPPPP 482
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect(2) = 0.088
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 505 PPPPPPPP 482
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197



 Score = 24.2 bits (50), Expect(2) = 0.088
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 502 PPPPPPPXXXXKXT 461
           PPPPPPP    + T
Sbjct: 238 PPPPPPPTLPPQST 251


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 504 PPPPPPPXXGXKKXPPPXPP 445
           PPP PPP  G    PP  PP
Sbjct: 253 PPPIPPPSNGTVSSPPNSPP 272



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 502 PPPPPPPXXXXKXTPP 455
           PPPPPPP    +  PP
Sbjct: 311 PPPPPPPSRRNRGKPP 326



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 507 PPPPPPPPXXGXKKXPPP 454
           PPPPPP       + PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 10/30 (33%)
 Frame = -1

Query: 507 PPPPPPP----------PXXGXKKXPPPXP 448
           PPPPPPP          P  G    PPP P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 507 PPPPPPPPXXGXKKXP 460
           PPPPPPP      K P
Sbjct: 311 PPPPPPPSRRNRGKPP 326


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 24.6 bits (51), Expect(2) = 1.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 514 GXXPPPPPPPP 482
           G  PPPPPP P
Sbjct: 353 GSRPPPPPPMP 363



 Score = 22.2 bits (45), Expect(2) = 1.2
 Identities = 10/31 (32%), Positives = 10/31 (32%)
 Frame = -3

Query: 499 PPPPPPXXXXKXTPPXXPLYXFXXGGXFXPP 407
           PPPPPP        P  P         F  P
Sbjct: 356 PPPPPPMPAPIYNVPNVPTVPTVSPNPFLQP 386


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = +2

Query: 410 GXKXPPPXKXIKGGXGGGXFXXPXXGGGGGGGGXP 514
           G   PPP     GG GG        GG GG GG P
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGP 230


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 507  PPPPPPPPXXGXKK 466
            PPPPPPPP    KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 502 PPPPPPPXXXXKXTPPXXPL 443
           PPPPPPP      +P   PL
Sbjct: 370 PPPPPPPPELLNHSPKSRPL 389



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 507 PPPPPPPP 484
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 507 PPPPPPPPXXGXKKXPPPXP 448
           P PP P P    K  PPP P
Sbjct: 729 PAPPTPAPTPAVKHHPPPPP 748


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 505 PPPPPPPPXXXXKXTPPXXPL 443
           P PPPPPP        P  PL
Sbjct: 3   PAPPPPPPAPAPAAAAPAPPL 23


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 507  PPPPPPPPXXGXKKXPPPXPP 445
            PPP  PP   G    PPP  P
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLP 1736


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 501  PPPPPPXXGXKKXPPPXPP 445
            PPPPPP    K  PP   P
Sbjct: 1882 PPPPPPMALPKAGPPSAAP 1900


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 507 PPPPPPPP 484
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 507 PPPPPPPP 484
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
 Frame = -1

Query: 513  GXPPPPPP---PPXXGXKKXPPPXPP 445
            G PP PPP   PP        PP PP
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPPVPP 1212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,386
Number of Sequences: 5004
Number of extensions: 24782
Number of successful extensions: 321
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)