Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_H05
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.82 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   3.0  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   7.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 498 GGXPPPPPPXXVGG 539
           GG PPPPPP  V G
Sbjct: 759 GGPPPPPPPPGVAG 772



 Score = 23.0 bits (47), Expect(2) = 3.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 498 GGXPPPPPP 524
           G  PPPPPP
Sbjct: 772 GAGPPPPPP 780



 Score = 23.0 bits (47), Expect(2) = 3.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 498 GGXPPPPPPXXV 533
           G  PPPPPP  V
Sbjct: 774 GPPPPPPPPPAV 785



 Score = 21.8 bits (44), Expect(2) = 3.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 507 PPPPPPXXVGG 539
           PPPPPP    G
Sbjct: 778 PPPPPPAVSAG 788



 Score = 21.8 bits (44), Expect(2) = 3.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 507 PPPPPPXXVGG 539
           PPPPP    GG
Sbjct: 779 PPPPPAVSAGG 789


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.0 bits (47), Expect(2) = 3.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 498 GGXPPPPPP 524
           G  PPPPPP
Sbjct: 7   GNPPPPPPP 15



 Score = 21.8 bits (44), Expect(2) = 3.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 507 PPPPPPXXV 533
           PPPPPP  V
Sbjct: 25  PPPPPPGYV 33


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 498 GGXPPPPPP 524
           GG PPPPPP
Sbjct: 303 GGLPPPPPP 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,069,140
Number of Sequences: 5004
Number of extensions: 9301
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)