Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_H04
(904 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.54
06_01_0178 + 1386981-1387505 32 0.72
07_01_0479 + 3606663-3607448 31 0.95
03_02_0076 - 5451137-5452503,5453439-5453866,5453949-5454046,545... 31 1.7
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.7
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.2
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.8
01_01_1095 + 8635770-8636079,8656433-8656506,8657098-8657181 29 5.1
04_04_0517 + 25841292-25842099,25842256-25842308 29 6.7
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 6.7
01_03_0289 - 14725832-14726114,14726216-14726298,14726432-147265... 29 6.7
12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497 28 8.8
11_06_0655 - 25923171-25923185,25923208-25923432,25923865-259243... 28 8.8
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 28 8.8
07_03_1747 + 29188568-29188715,29188793-29189541 28 8.8
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 8.8
05_06_0060 - 25266735-25267210,25267323-25267569,25267650-252683... 28 8.8
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.54
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 343 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 179
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>06_01_0178 + 1386981-1387505
Length = 174
Score = 31.9 bits (69), Expect = 0.72
Identities = 23/84 (27%), Positives = 23/84 (27%)
Frame = -1
Query: 886 PAGXXXAXXXXXGGNXXTPXXGGXMXGXKGXRGGXXXGXXPXKXGXGPPGXXXGGXSRER 707
P G GG GG G G GG G K G G G GG
Sbjct: 18 PGGRGRGGRGGRGGRGGASGGGGGGGGGGGGGGGGGAGGKGGKGGAGGHGGAGGGGGGGG 77
Query: 706 HSGTXPTXGXHXXRGSWVXTAXGK 635
G G H G GK
Sbjct: 78 GKGRKGGAGGHGGAGGGGGGGGGK 101
>07_01_0479 + 3606663-3607448
Length = 261
Score = 31.5 bits (68), Expect = 0.95
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +3
Query: 723 PPXXXPGGPXPXFXGXXPXXXPPRXPXXPXXNPP 824
PP PG P P F P PP P P NPP
Sbjct: 229 PPGMRPGMPPPPFRPGMP--PPPPGPQQPGQNPP 260
>03_02_0076 - 5451137-5452503,5453439-5453866,5453949-5454046,
5454723-5454836,5455017-5455111,5455222-5455283,
5455398-5455557,5456247-5456643
Length = 906
Score = 30.7 bits (66), Expect = 1.7
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Frame = -1
Query: 823 GGXMXGXKGXRGGXXXGXXPXKXGX--GPPGXXXGGXSRERHSGTXP--TXGXHXXRG-S 659
G G G RGG G P + GPPG GG R+ G P + RG
Sbjct: 782 GSYPRGDHGRRGGRDHGDPPPEGENPNGPPGFGRGGRRGGRNHGNQPEANENPNGQRGFG 841
Query: 658 WVXTAXGKXXSHP 620
T G+ HP
Sbjct: 842 RGATRGGRNHDHP 854
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +3
Query: 723 PPXXXPGGPXPXFXGXXPXXXPPRXPXXPXXNPPXXGVXXFPP 851
PP P GP P P PP P PP G PP
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPP 378
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 241 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 357
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 256 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 167
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>01_01_1095 + 8635770-8636079,8656433-8656506,8657098-8657181
Length = 155
Score = 29.1 bits (62), Expect = 5.1
Identities = 19/63 (30%), Positives = 25/63 (39%)
Frame = +3
Query: 357 CGSPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTCTFK 536
CGSP + A+ A Y LR S + +V W I P+ TC F+
Sbjct: 49 CGSPTQTMGTEASPAACSYVLRCHQSLSSTVCWAASTAI-MPLRPAERYIRSGRGTCVFR 107
Query: 537 FGS 545
GS
Sbjct: 108 MGS 110
>04_04_0517 + 25841292-25842099,25842256-25842308
Length = 286
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 324 AAALGWCPRNACGSPDVVLLNAAATTAGDYALRARVSNNGSVSWI 458
A AL C R DV N GD R R+++ GS +W+
Sbjct: 121 AEALALCHRRGVAHRDVKPDNVLLDATGDGPPRVRLADFGSAAWV 165
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.7 bits (61), Expect = 6.7
Identities = 21/69 (30%), Positives = 21/69 (30%)
Frame = -2
Query: 849 GGTGXPXXWGGXWXXXKAXXGXXXQXXPPXXPXXAPQAXXPGGXPGKDIRXXXXRGXXTL 670
GGT P GG G PP P AP P G PG RG
Sbjct: 1171 GGTPPPNAHGGVAPPPPPPRGHGGVGGPP-TPPGAPAPPMPPGVPGGPPPPPGGRGLPAP 1229
Query: 669 AAGPGXXPH 643
G G H
Sbjct: 1230 PGGRGVVGH 1238
>01_03_0289 -
14725832-14726114,14726216-14726298,14726432-14726545,
14727830-14728199,14728726-14728856,14728970-14729078,
14729257-14729378,14729522-14729625,14729849-14729953,
14730034-14730192,14730336-14730391,14730576-14730627,
14730725-14731031
Length = 664
Score = 28.7 bits (61), Expect = 6.7
Identities = 23/80 (28%), Positives = 39/80 (48%)
Frame = +3
Query: 303 VGTQGNGAAALGWCPRNACGSPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTP 482
+GT G AL RN C +VL+N AT+ ++ +S + +S R+ I++
Sbjct: 163 LGTSFGGCIALAVAARNPCIDLVLVLVN-PATSFEKSDIKQLLSVSSPLSDRARIAITSL 221
Query: 483 ISMQLDNWPXDMQTCTFKFG 542
++ +DN DM + K G
Sbjct: 222 LNYNIDN-EVDMALSSMKSG 240
>12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497
Length = 800
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = -3
Query: 461 LYPGDGAVIRYTGAESVVPGGGCSRV*QYHVRRST-SVPRT--PAKCCSPIPLRSNSVVC 291
++PGDGA +T ++VP +R V +ST + P PA S +P +++ +
Sbjct: 140 MFPGDGATATHTTCSTMVPSSATAR----PVAKSTAAAPERVFPATTASSVPSITSAAMV 195
Query: 290 RSNSFED 270
S F +
Sbjct: 196 TSVPFNE 202
>11_06_0655 -
25923171-25923185,25923208-25923432,25923865-25924324,
25924330-25924985
Length = 451
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = -3
Query: 461 LYPGDGAVIRYTGAESVVPGGGCSRV*QYHVRRST-SVPRT--PAKCCSPIPLRSNSVVC 291
++PGDGA +T ++VP +R V +ST + P PA S +P +++ +
Sbjct: 119 MFPGDGATATHTTCSTMVPSSATAR----PVAKSTAAAPERVFPATTASSVPSITSAAMV 174
Query: 290 RSNSFED 270
S F +
Sbjct: 175 TSVPFNE 181
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +3
Query: 723 PPXXXPGGPXPXFXGXXPXXXPPRXPXXPXXNPP 824
PP P GP P P PP P P PP
Sbjct: 1138 PPPPLPEGP-PPLPSDSPPCQPPLPPSPPPATPP 1170
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +1
Query: 397 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPXTCRLARSSSVLG 549
PPP TT++ V L TA + S + QF+C+ TC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 128 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 283
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>05_06_0060 -
25266735-25267210,25267323-25267569,25267650-25268345,
25268457-25268709,25268786-25269261,25270760-25270909
Length = 765
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +1
Query: 544 LGCTIV-TKWIXXIDKXIYRMFESGAWD 624
LGC I+ W+ K ++R SG WD
Sbjct: 708 LGCVIIHNNWVNGRRKKLHRQMASGLWD 735
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,893,358
Number of Sequences: 37544
Number of extensions: 523417
Number of successful extensions: 1565
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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