Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_H04
(904 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 44 2e-06
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 41 2e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 41 2e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 41 2e-05
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 39 5e-05
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 39 7e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 38 1e-04
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 37 2e-04
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 37 2e-04
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 37 2e-04
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 37 3e-04
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 36 5e-04
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 36 5e-04
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 36 7e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 36 7e-04
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 35 0.001
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 35 0.001
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 35 0.001
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 34 0.002
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 34 0.002
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 33 0.004
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 31 0.011
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 31 0.011
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 29 0.044
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 29 0.058
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 29 0.058
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 29 0.058
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 28 0.10
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 27 0.31
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 26 0.41
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 25 0.94
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 25 1.2
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 25 1.2
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 25 1.2
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 25 1.2
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 22 6.7
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 8.8
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 44.0 bits (99), Expect = 2e-06
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +3
Query: 345 PRNACGSPDVVLLNAAATTAGDYALRAR----VSNNGSVSWIKRLDISTPISMQLDNWPX 512
P + PD+VL N A G+Y +R + + NG V W+ + ++ + +P
Sbjct: 104 PPDKVWKPDIVLFNNAD---GNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYFPF 160
Query: 513 DMQTCTFKFGSRMHNSDEM 569
D QTC KFGS N D++
Sbjct: 161 DQQTCIMKFGSWTFNGDQV 179
Score = 25.0 bits (52), Expect = 0.94
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 191 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG 325
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 40.7 bits (91), Expect = 2e-05
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +3
Query: 345 PRNACGSPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXDMQ 521
P + PD+VL N A A +A + + G V W + + ++ +P D Q
Sbjct: 106 PSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQ 165
Query: 522 TCTFKFGSRMHNSDEMDXR 578
TC KFGS ++ ++D R
Sbjct: 166 TCVLKFGSWTYDGFKVDLR 184
Score = 27.5 bits (58), Expect = 0.18
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +2
Query: 140 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 304
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 305 WNAGEWGCSTWL-VSSERLW 361
W E+G L V S+ +W
Sbjct: 92 WEPKEYGGVKMLHVPSDHIW 111
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 40.7 bits (91), Expect = 2e-05
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +3
Query: 345 PRNACGSPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXDMQ 521
P + PD+VL N A A +A ++ G V W + + ++ +P D Q
Sbjct: 102 PSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDEQ 161
Query: 522 TCTFKFGSRMHNSDEMDXR 578
TC KFGS ++ ++D R
Sbjct: 162 TCVMKFGSWTYDGFQVDLR 180
Score = 29.5 bits (63), Expect = 0.044
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Frame = +2
Query: 113 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 271
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 361
++ +W D +L W+ E+G L V S+ +W
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIW 107
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 40.7 bits (91), Expect = 2e-05
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +3
Query: 321 GAAALGWCPRNACGSPDVVLLNAAATTAGDYAL----RARVSNNGSVSWIKRLDISTPIS 488
G + + P PD+VL N A G+Y + +A + G VSW +
Sbjct: 103 GGVEMLYVPSENIWLPDIVLYNNAD---GNYEVTLMTKATLKYTGDVSWKPPAIYKSSCE 159
Query: 489 MQLDNWPXDMQTCTFKFGSRMHNSDEMDXR 578
+ ++ +P D Q+C KFGS +N ++D +
Sbjct: 160 INVEYFPFDEQSCIMKFGSWTYNGAQVDLK 189
Score = 32.3 bits (70), Expect = 0.006
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = +2
Query: 140 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLS 304
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 305 WNAGEWGCSTWL-VSSERLWI 364
WN E+G L V SE +W+
Sbjct: 97 WNPEEYGGVEMLYVPSENIWL 117
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 39.1 bits (87), Expect = 5e-05
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Frame = +2
Query: 95 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESEST 253
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 254 VRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWI 364
+ L+ W D + W+ E+G T L V SE +W+
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWL 104
Score = 39.1 bits (87), Expect = 5e-05
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +3
Query: 366 PDVVLLNAAATTAGDYAL-RARVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTCTFKFG 542
PD+VL N A G + +A + G V W + + + +P D QTC KFG
Sbjct: 105 PDIVLYNNADGEYGVTTMTKAILHYTGKVLWTPPAIFKSSCEIDVRYFPFDQQTCFMKFG 164
Query: 543 SRMHNSDEMDXRD*QXNIPD 602
S ++ ++D + N+ D
Sbjct: 165 SWTYDGIQIDLKHINQNMGD 184
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 38.7 bits (86), Expect = 7e-05
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Frame = +2
Query: 113 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 277
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 278 MNWIDKRLSWNAGEW-GCSTWLVSSERLWI 364
+ W L+W + E+ ++ V S +W+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWV 117
Score = 25.8 bits (54), Expect = 0.54
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 504 WPXDMQTCTFKFGSRMHNSDEM 569
WP D+ CT S H S+E+
Sbjct: 166 WPYDILNCTIHIASWSHGSNEI 187
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 37.9 bits (84), Expect = 1e-04
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = +3
Query: 345 PRNACGSPDVVLLNAAATTAGDYAL----RARVSNNGSVSWIKRLDISTPISMQLDNWPX 512
P + PD+VL N A G+Y + +A V +G V W + S+ ++ +P
Sbjct: 106 PSDHIWRPDIVLYNNAD---GNYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDVEFFPY 162
Query: 513 DMQTCTFKFGSRMHNSDEMDXR 578
D+QTC K GS ++ ++D R
Sbjct: 163 DVQTCVLKLGSWTYDGFKVDLR 184
Score = 27.5 bits (58), Expect = 0.18
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +2
Query: 140 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 304
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 305 WNAGEWGCSTWL-VSSERLW 361
W E+G L V S+ +W
Sbjct: 92 WEPKEYGGVKMLHVPSDHIW 111
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 37.1 bits (82), Expect = 2e-04
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +3
Query: 351 NACGSPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTC 527
N PD+++ N+A G Y V++NGS ++ + + + +P D Q C
Sbjct: 134 NKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 193
Query: 528 TFKFGSRMHNSDEMD 572
KFGS ++ +++D
Sbjct: 194 DMKFGSWTYDGNQVD 208
Score = 29.9 bits (64), Expect = 0.033
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Frame = +2
Query: 140 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 304
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 305 WNAGEW-GCSTWLVSSERLW 361
WN E+ G ++ +LW
Sbjct: 118 WNESEYGGVKDLRITPNKLW 137
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 37.1 bits (82), Expect = 2e-04
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +3
Query: 351 NACGSPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTC 527
N PD+++ N+A G Y V++NGS ++ + + + +P D Q C
Sbjct: 134 NKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 193
Query: 528 TFKFGSRMHNSDEMD 572
KFGS ++ +++D
Sbjct: 194 DMKFGSWTYDGNQVD 208
Score = 29.9 bits (64), Expect = 0.033
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Frame = +2
Query: 140 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 304
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 305 WNAGEW-GCSTWLVSSERLW 361
WN E+ G ++ +LW
Sbjct: 118 WNESEYGGVKDLRITPNKLW 137
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 37.1 bits (82), Expect = 2e-04
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +3
Query: 345 PRNACGSPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXDMQ 521
P + PDV++ N+A G Y V NNG+ ++ + + + +P D Q
Sbjct: 101 PPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCLYVPPGIFKSTCKIDITWFPFDDQ 160
Query: 522 TCTFKFGSRMHNSDEMD 572
C KFGS ++ ++D
Sbjct: 161 RCEMKFGSWTYDGFQLD 177
Score = 25.8 bits (54), Expect = 0.54
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Frame = +2
Query: 92 AIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-NIRESESTV 256
A+A++ + +++ LL TY+ E P ++ +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 257 RILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 361
L++ W D + WN ++G L + RLW
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLW 106
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 36.7 bits (81), Expect = 3e-04
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +3
Query: 351 NACGSPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTC 527
N PD+++ N+A G Y V++NGS ++ + + + +P D Q C
Sbjct: 66 NKLWKPDILMYNSADEGFDGTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 125
Query: 528 TFKFGSRMHNSDEMD 572
KFGS ++ +++D
Sbjct: 126 DMKFGSWTYDGNQVD 140
Score = 29.5 bits (63), Expect = 0.044
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 361
++ E + A L++ W+D L WN E+ G ++ +LW
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLW 69
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 35.9 bits (79), Expect = 5e-04
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +3
Query: 351 NACGSPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTC 527
N PD+++ N+A G Y V+++GS ++ + M + +P D Q C
Sbjct: 66 NKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDDQHC 125
Query: 528 TFKFGSRMHNSDEMD 572
KFGS ++ +++D
Sbjct: 126 DMKFGSWTYDGNQVD 140
Score = 29.5 bits (63), Expect = 0.044
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 361
++ E + A L++ W+D L WN E+ G ++ +LW
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLW 69
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 35.9 bits (79), Expect = 5e-04
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +3
Query: 366 PDVVLLNAAATT---AGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTCTFK 536
PD+ + N+ T G V ++GSVS + + + +WP D C
Sbjct: 127 PDISVYNSGDMTFDQTGIPPTTCLVFSSGSVSCVPSVKHVAKCATDFSSWPYDTHRCRIN 186
Query: 537 FGSRMHNSDEMD 572
FGS +H+ +E++
Sbjct: 187 FGSWVHSGEEVN 198
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 35.5 bits (78), Expect = 7e-04
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +3
Query: 351 NACGSPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTC 527
N PD+++ N+A G Y V+++GS ++ + M + +P D Q C
Sbjct: 66 NKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDDQHC 125
Query: 528 TFKFGSRMHNSDEMD 572
KFGS ++ +++D
Sbjct: 126 DMKFGSWTYDGNQVD 140
Score = 29.5 bits (63), Expect = 0.044
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 361
++ E + A L++ W+D L WN E+ G ++ +LW
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLW 69
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 35.5 bits (78), Expect = 7e-04
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 426 RVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTCTFKFGS 545
R+ +G V + RL I M L+N+P D Q C +FGS
Sbjct: 111 RLYQDGRVLYSSRLTIKAGCPMNLENFPMDTQRCPLQFGS 150
Score = 35.1 bits (77), Expect = 9e-04
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 286
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 287 IDKRLSWNAGEWGCSTWLVSSERLW 361
+D+RL++ G+ + + R+W
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIW 86
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 34.7 bits (76), Expect = 0.001
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +3
Query: 351 NACGSPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTC 527
N PD+++ N+A G Y V+++GS ++ + + + +P D Q C
Sbjct: 66 NKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDDQHC 125
Query: 528 TFKFGSRMHNSDEMD 572
KFGS ++ +++D
Sbjct: 126 DMKFGSWTYDGNQVD 140
Score = 29.5 bits (63), Expect = 0.044
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 361
++ E + A L++ W+D L WN E+ G ++ +LW
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLW 69
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 34.7 bits (76), Expect = 0.001
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 426 RVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTCTFKFGS 545
R+S +G + + RL I M+L N+P D Q+C GS
Sbjct: 143 RISQDGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILGS 182
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 34.7 bits (76), Expect = 0.001
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Frame = +2
Query: 86 TCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRES 244
+C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 245 ESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWI 364
T + ++ W D +L WN ++ G T V SE +W+
Sbjct: 66 IMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWL 104
Score = 34.7 bits (76), Expect = 0.001
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +3
Query: 366 PDVVLLNAAATTAGDYAL----RARVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTCTF 533
PD+VL N A G+Y + +A + + G V W + + ++ +P D QTC
Sbjct: 105 PDIVLYNNAD---GNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFM 161
Query: 534 KFGSRMHNSDEMDXR 578
KFGS ++ +D R
Sbjct: 162 KFGSWTYDGYTVDLR 176
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 34.3 bits (75), Expect = 0.002
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +3
Query: 351 NACGSPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTC 527
N PD+++ N+A G Y V+++GS ++ + + + +P D Q C
Sbjct: 66 NKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDDQHC 125
Query: 528 TFKFGSRMHNSDEMD 572
KFGS ++ +++D
Sbjct: 126 DMKFGSWTYDGNQVD 140
Score = 29.5 bits (63), Expect = 0.044
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 361
++ E + A L++ W+D L WN E+ G ++ +LW
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLW 69
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 34.3 bits (75), Expect = 0.002
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +3
Query: 351 NACGSPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTC 527
N PD+++ N+A G Y V+++GS ++ + + + +P D Q C
Sbjct: 66 NKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHC 125
Query: 528 TFKFGSRMHNSDEMD 572
KFGS ++ +++D
Sbjct: 126 DMKFGSWTYDGNQVD 140
Score = 29.5 bits (63), Expect = 0.044
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 361
++ E + A L++ W+D L WN E+ G ++ +LW
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLW 69
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 33.1 bits (72), Expect = 0.004
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +3
Query: 345 PRNACGSPDVVLLNAAATTAGDYALRARV--SNNGSVSWIKRLDISTPISMQLDNWPXDM 518
P N PD +L N A + V S+ G V W+ + + ++ +P D
Sbjct: 83 PYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVEFFPFDE 142
Query: 519 QTCTFKFGSRMHNSDEMD 572
Q C K+ S ++ +++
Sbjct: 143 QRCVLKWASWTYDGYQLE 160
Score = 26.2 bits (55), Expect = 0.41
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +2
Query: 194 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 361
+V L+LH ++ E + + W D L WNA E+ G V R+W
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVW 88
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 31.5 bits (68), Expect = 0.011
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 426 RVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTCTFKFGSRMHNSDEM 569
R+ NGSV + R+ ++ M L +P D Q C+ + S +D++
Sbjct: 141 RIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDL 188
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 31.5 bits (68), Expect = 0.011
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 426 RVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTCTFKFGSRMHNSDEM 569
R+ NGSV + R+ ++ M L +P D Q C+ + S +D++
Sbjct: 141 RIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDL 188
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 29.5 bits (63), Expect = 0.044
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 426 RVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTCTFKFGS 545
R+S +GSV++ R + M L +P D Q CT + S
Sbjct: 142 RLSGDGSVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIES 181
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 29.1 bits (62), Expect = 0.058
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 393 ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTCTFKFGS 545
ATT+ ++ R+ ++GS++ RL I+ M L +P D Q C + S
Sbjct: 111 ATTSNEFI---RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIES 158
Score = 25.8 bits (54), Expect = 0.54
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 286
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 287 IDKRLSWNAGEWGCSTWLVSSE---RLWI 364
D RL++ G T V SE +W+
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWV 95
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 29.1 bits (62), Expect = 0.058
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 393 ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTCTFKFGS 545
ATT+ ++ R+ ++GS++ RL I+ M L +P D Q C + S
Sbjct: 111 ATTSNEFI---RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIES 158
Score = 24.6 bits (51), Expect = 1.2
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 286
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 287 IDKRLSWNAGEWGCSTWLVSSE---RLWI 364
D RL++ G T V SE +W+
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWV 95
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 29.1 bits (62), Expect = 0.058
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 393 ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTCTFKFGS 545
ATT+ ++ R+ ++GS++ RL I+ M L +P D Q C + S
Sbjct: 50 ATTSNEFI---RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIES 97
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 28.3 bits (60), Expect = 0.10
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 429 VSNNGSVSWIKRLDISTPISMQLDNWPXDMQTCTFKFGSRMHNSDEM 569
+ +G V RL + ++L+ +P D+Q C F S HN +M
Sbjct: 124 IDPSGMVRLNTRLQATLNCGLRLEKFPFDVQECPLIFESWTHNVLDM 170
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 26.6 bits (56), Expect = 0.31
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 444 SVSWIKRLDISTPISMQLDNWPXDMQTCTFKFGSRMHNSDEM 569
++ ++ +L + +M +P D Q C + S H +DEM
Sbjct: 150 TILYMVKLTLKLSCAMNFLIYPHDTQECKLQMESLSHTTDEM 191
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 26.2 bits (55), Expect = 0.41
Identities = 13/71 (18%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +3
Query: 366 PDVVLLNAAATTAGDYALRAR---VSNNGSVSWIKRLDISTPISMQLDNWPXDMQTCTFK 536
PD NA T + ++ + ++ ++ ++ +L + +M+ +++P D Q C+
Sbjct: 90 PDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQICSMM 149
Query: 537 FGSRMHNSDEM 569
S H + ++
Sbjct: 150 IESLSHTTQDL 160
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 25.0 bits (52), Expect = 0.94
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 318 NGAAALGWCPRNACGSPDVVLLNAAATTAGDYALRARVSNNGSV 449
NG A+ C PD++ + A + GD +V NG++
Sbjct: 17 NGTGAVVECQARGNPQPDIIWVRADGSAVGDVPGLRQVLPNGNL 60
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 426 RVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTCTFKFGS 545
R+ NG+V+++ R + +L+ +P D C+F S
Sbjct: 167 RIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIES 206
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 426 RVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTCTFKFGS 545
R+ NG+V+++ R + +L+ +P D C+F S
Sbjct: 167 RIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIES 206
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 426 RVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTCTFKFGS 545
R+ NG+V+++ R + +L+ +P D C+F S
Sbjct: 218 RIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIES 257
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 426 RVSNNGSVSWIKRLDISTPISMQLDNWPXDMQTCTFKFGS 545
R+ NG+V+++ R + +L+ +P D C+F S
Sbjct: 167 RIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIES 206
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 22.2 bits (45), Expect = 6.7
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Frame = +3
Query: 366 PDVVLLNAAATTAGDYALRARVSN-----NGSVSWIKRLDISTPISMQLDNWPXDMQTCT 530
PD LNA + AL + S+ N +V + R+ M+ +P D+Q C
Sbjct: 74 PDPYFLNAKVSEIA--ALNHKFSSVTLYRNKTVKYSARMHAIIACQMEFQLYPMDIQICP 131
Query: 531 FKFGSRMHNSDEMDXR 578
S ++ ++ R
Sbjct: 132 IYIESFSYHKQKLRLR 147
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 8.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 337 PSAAAPFPCVPTQS 296
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,912
Number of Sequences: 438
Number of extensions: 5056
Number of successful extensions: 75
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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