Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_H03
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    31   0.23 
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.40 
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    29   1.2  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    29   1.2  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    28   2.1  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   4.9  

>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
 Frame = -3

Query: 389 PRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNSVVCRSNSFEDLP-VFARWTR--TH 219
           P   L P +A P   +TS      +  +PTP+ S S+  R NSF        RW     H
Sbjct: 249 PLSSLPPLVAAPTSPNTSSTLI-TQSAAPTPIASTSI--RINSFNPRNGSIKRWRSFSRH 305

Query: 218 EC*HVSNAGSG*LRFWSRG----GSPDRTLSRSESIMRDSDVAFSHS 90
                SN+ S             GSP R  SRS S+ R S +   H+
Sbjct: 306 SSATYSNSPSSNFSNMKSSEVDPGSPPRIKSRSYSLSRSSSMKLFHT 352


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 223 VRVHRANTGRSSNELDRQTTELERR 297
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = -3

Query: 209 HVSNAGSG*LRFWSRGGS---PDRTLSRSESIMRDSDVAFSHSAALAIAQVRRNGNKNNI 39
           H+S    G  R +++GGS    +R L R E   +D+ V ++ SAAL +  + R  + ++ 
Sbjct: 433 HLSGMTMGMRRMFTQGGSYSAQERGLCRLEQ--KDTVVRYAQSAALYLIFLLRRPSADSG 490

Query: 38  SRRH 27
            RRH
Sbjct: 491 IRRH 494


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = -3

Query: 209 HVSNAGSG*LRFWSRGGS---PDRTLSRSESIMRDSDVAFSHSAALAIAQVRRNGNKNNI 39
           H+S    G  R +++GGS    +R L R E   +D+ V ++ SAAL +  + R  + ++ 
Sbjct: 433 HLSGMTMGMRRMFTQGGSYSAQERGLCRLEQ--KDTVVRYAQSAALYLIFLLRRPSADSG 490

Query: 38  SRRH 27
            RRH
Sbjct: 491 IRRH 494


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = -3

Query: 173 WSRGGSPDRTLSRSESIMRDSDVAFSHSAALAIAQVRRNGNKNNISRRHFMTT 15
           WS G +P+     +ESI+   +       +L ++  R +   +N S  H + T
Sbjct: 242 WSHGLTPEVFWQNTESILTCPEEQLEQKISLLLSSTRNSPTMSNSSLTHLLPT 294


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/46 (26%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
 Frame = +1

Query: 73  AIASAAECENATS-LSLMIDSLLDNVRSGLPPRLQNRSQPDPAFET 207
           ++AS+ + ++A++ +S ++DS   +V + +P  + + + PD A E+
Sbjct: 192 SVASSVDTDSASATISSVVDSATSSVSTVIPSSIISAAPPDSASES 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,392
Number of Sequences: 5004
Number of extensions: 48126
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)