Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_G24
(900 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos... 122 5e-29
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 39 0.001
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 29 0.90
SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces... 29 1.2
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 29 1.2
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 29 1.2
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 28 2.1
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 27 2.7
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces... 27 4.8
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 4.8
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 27 4.8
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 26 6.3
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 8.4
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 8.4
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 26 8.4
>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 425
Score = 122 bits (295), Expect = 5e-29
Identities = 73/227 (32%), Positives = 125/227 (55%), Gaps = 18/227 (7%)
Frame = +2
Query: 137 RRKKRLADKILPQKVRDLVPESQAYMDLLAFERKLDATIMRKRLDIQEALKRPMKQKRKL 316
++ R+ ++ +P + + +PE++ Y+ L ERKLD+ I+RKR D+Q++L R + R L
Sbjct: 23 KKSMRIIEREIPDSLLEKIPEAEDYIALQDLERKLDSLIVRKRFDLQDSLSRNSHKTRIL 82
Query: 317 RIFI----SNTFYPGQGDN-----------AVPSWELRVEGRLLDDSKNDPNKNVPLQVK 451
R++I +N + +G+N +P W L +EGRLL + ++ +K L
Sbjct: 83 RMYIHSTVANQSWQQKGENQENNSGDINSLPIPEWTLHIEGRLLVNPDDEDDKAFEL--- 139
Query: 452 RKFSSFFKSLVIEL--DKDLHGPDNHLVEWHRTVTTQET-DGFQVKRPGYKNVRCTILLL 622
F++FF+ + I++ DL+ P + VEW++ T +G V R G ++V I+L
Sbjct: 140 APFTNFFRKIAIQILRSDDLY-PSGNYVEWNKLPDNSNTSNGITVTRKGDQSVDVKIMLY 198
Query: 623 LDYQPLQFKLDXRLARLLGVHTXTRXVIXNALWQYVXTHRLQDPHER 763
+ P ++KL A +LG+ TR I + LWQY+ HRLQD E+
Sbjct: 199 PEEHPERYKLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEK 245
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 38.7 bits (86), Expect = 0.001
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 647 KLDXRLARLLGVHTXTRXVIXNALWQYVXTHRLQDPHER 763
KL +LA LG+ +R LW+Y+ H LQDP+++
Sbjct: 122 KLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDK 160
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 29.1 bits (62), Expect = 0.90
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Frame = +2
Query: 329 SNTFYPGQGDNAVP----SWELRVEGRLLDDSKNDPNKNVPLQVKRKFSSFFKSLVIELD 496
S P DN+VP S L G ++++ N P N PL R S S VI D
Sbjct: 222 STMLMPSDSDNSVPGIQNSNNLENTGAFVENA-NSPQSNTPLSTFRHSSPLSLSPVITSD 280
Query: 497 KDL 505
D+
Sbjct: 281 NDV 283
>SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/71 (22%), Positives = 34/71 (47%)
Frame = +2
Query: 371 SWELRVEGRLLDDSKNDPNKNVPLQVKRKFSSFFKSLVIELDKDLHGPDNHLVEWHRTVT 550
S +L + G ++++ KN+ + +R+F SF +++ I D + + TVT
Sbjct: 68 SGKLTISGEVVNERKNESTEGNQRWSERRFGSFSRTITIPAKIDADRIEANFSNGLLTVT 127
Query: 551 TQETDGFQVKR 583
+ + Q K+
Sbjct: 128 LPKVEKSQTKK 138
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 160 QDPAAEGAGPRARVAGLHG-PARVRTQTRRHHNAQTSRHSRSPQTPHETETKTSNIHLQH 336
+D A+G + + G H A + + + H+ +T++ +S TP+ T K + LQH
Sbjct: 524 KDLIADGQISKLYIDGKHRCEAAISSHSSESHSKRTTQQPKS--TPNHTNIKVKSERLQH 581
Query: 337 V 339
V
Sbjct: 582 V 582
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 28.7 bits (61), Expect = 1.2
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Frame = +2
Query: 395 RLLDDSKNDPNKNVPLQVKRKFSSF-FKSLVIELDKDLHGPDNHLVEWHRTVTTQ----E 559
+++D ++ N+ VP+ + + + F +LVI + HL+ + V + E
Sbjct: 167 KIVDAFESTINQGVPVDTQEESEAMLFMNLVILKKDGVEDAYKHLLSIEKKVLDRVAFLE 226
Query: 560 TDG-FQVKRPGYKNVRCTILLLLDYQPLQFKLDXRLARLLGVHTXTRXVIXNALW 721
T +++ + + TI LLLD P + L R G + V+ +A W
Sbjct: 227 TRAEYELYLSKMEEAKSTIYLLLDRNPDNHQYYYNLQRAYGYEDASGKVLDSAEW 281
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = +2
Query: 113 GGRTVFRSRRKKRLADKILPQKVRDLVPESQAYMDLLAFERKLDATIMRKRLDIQE---A 283
G +T+ + +RK+R AD+ + + +++ Y++ A K + L +
Sbjct: 73 GTQTIKKKKRKRRYADEYY-DRTDPFIDDAELYIEEKAAATKDGFFVFSGPLVAEGDTVK 131
Query: 284 LKRPMKQKRKLRIFISNTFYPGQGDNAV 367
++R K K+K + +SN +P +AV
Sbjct: 132 IERSKKTKKKKKTSLSNATHPAPAVSAV 159
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +3
Query: 258 ANVSTFKKPSN-AP*-NR-NENFEYSSPTRSTPVRATTRCRR 374
A+ S KKP+ P NR N+N + SPT + P + TT RR
Sbjct: 156 ASPSFLKKPAEYTPLANRQNQNLAFDSPTEALPPKPTTPWRR 197
>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 118
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/57 (22%), Positives = 29/57 (50%)
Frame = +2
Query: 236 KLDATIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPGQGDNAVPSWELRVEGRLLD 406
K+ + ++ + D Q +K P++ K+ + G+G ++E+R+ RL+D
Sbjct: 34 KVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRKTPNGEGSKTWETYEMRIHKRLID 90
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 422 PNKNVPLQVKRKFSSFFKSLVIELDKDLHGPDNHLVEWHRTVTTQETDG 568
P N PL KR + + S VI LDK + + +V W + + E G
Sbjct: 48 PCGNNPL--KRPIAEYVSSGVINLDKPANPSSHEVVAWVKKILRVEKTG 94
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 26.6 bits (56), Expect = 4.8
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Frame = +2
Query: 152 LADKILPQKVRDLVPESQAYMDLLAFE-----RKLDATIMRKRLDIQEALKR--PMKQKR 310
+ D+ LP K DLV E+ + + L R+LD IM +++++ K +R
Sbjct: 314 ITDRFLPDKAIDLVDEACSSLRLQQESKPDELRRLDRQIMTIQIELESLRKETDTTSVER 373
Query: 311 KLRIFISNTFYPGQGDNAVPSWELRVEGRLLDDSK 415
+ ++ T + D +WE E +LLD K
Sbjct: 374 REKLESKLTDLKEEQDKLSAAWE--EERKLLDSIK 406
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 323 FISNTFYPGQGDNAVPSWELR 385
F SN Y G DN+V W+LR
Sbjct: 544 FDSNHLYSGSYDNSVRIWDLR 564
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -3
Query: 499 FIEFYHQRLEERRKLPLHLQRDILVRI 419
F + Y + LE RR+LP++ QR+ ++I
Sbjct: 61 FSQNYFKILETRRELPVYQQREEFLKI 87
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 311 KLRIFISNTFYPGQGDNAVPSWELRVEGRLLDDS 412
++ +F + FYPG D+ + W L + LL S
Sbjct: 91 QMYVFWTPNFYPGVQDSVMELWHLSSQVSLLGQS 124
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 8.4
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 573 WKPSVSCVVTVRCHSTRW 520
++P SC+++VR STRW
Sbjct: 155 FEPLDSCMLSVRARSTRW 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,171
Number of Sequences: 5004
Number of extensions: 60148
Number of successful extensions: 225
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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