Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_G24
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    27   0.23 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   5.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.6  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   8.8  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   8.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +1

Query: 247 HHNAQTSRHSRSPQTPHETETKTSNIHLQHVLP 345
           HH+     HS    TPH   +  +  H QH  P
Sbjct: 415 HHHTMGHGHSHIHATPHHHHSHAATPHHQHSTP 447


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 232 TQTRRHH-NAQTSRHSRSPQTPHETETKTSNIH 327
           +QT  H+ N QT  HS+   TP  T  K S I+
Sbjct: 366 SQTSVHYSNGQT--HSQLCPTPRSTHLKVSGIN 396


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 35  SSLKNHYFHCFITYSVGRK 91
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +1

Query: 214 GPARVRTQTRRHHNAQTSRHSRSPQTPHETETKTSNIH 327
           GP         HH  Q+ +H    Q P  +E+ +S ++
Sbjct: 344 GPTMGPPHHHHHHQTQSLQHLHYRQPPTLSESYSSYVN 381


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
          protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 14 VGDRFARSSLKNHYFHCFI 70
          + +  A   L+N Y+ CFI
Sbjct: 32 IDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
          protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 14 VGDRFARSSLKNHYFHCFI 70
          + +  A   L+N Y+ CFI
Sbjct: 32 IDEILANDRLRNQYYDCFI 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,248
Number of Sequences: 438
Number of extensions: 4168
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)