Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_G19
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    31   1.2  
08_02_0600 - 19166283-19166851,19166988-19168839,19169347-191694...    30   2.8  
03_04_0006 + 16257288-16259522                                         30   2.8  
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    30   2.8  
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18...    29   3.7  
06_03_0854 + 25400855-25403741,25406174-25407708                       29   4.9  
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437...    29   4.9  
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           29   6.5  

>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 332  GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 478
            G+  PR +  D  EW N  PT+   ++ + +PRE     Q+ K  +  L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441


>08_02_0600 -
           19166283-19166851,19166988-19168839,19169347-19169415,
           19171797-19171844,19173500-19173622
          Length = 886

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 51  PGPAFSGLPRIFLAV-RSCRFRFVRDRHDSVRPPFNG 158
           P P ++GLPR F    R C+    +D H  V PP  G
Sbjct: 222 PPPPYTGLPRAFFGQHRGCKVTLYQDAH--VAPPLAG 256


>03_04_0006 + 16257288-16259522
          Length = 744

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -3

Query: 539 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 387
           A+RSP    Y T L +   ARL    T    PA SP    +AV S   + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215


>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 356 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 255
           LDDE   YL  R  V   +  RLL+F++VD  STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313


>08_01_0025 -
           184899-185384,185707-185940,187156-187341,188108-188158
          Length = 318

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 200 LDSRIPLVRTSSELTVERRSYRIVPIAHETKPTRP 96
           LD+ IP+ RT  E + E R   I+P  +   P+ P
Sbjct: 274 LDNEIPITRTKIESSSEVRDLEILPTGNAALPSSP 308


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 539 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 414
           AKR+PT  T    P  AR  +++   +F   +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515


>04_04_1105 - 30942735-30942791,30943116-30943466,30943670-30943762,
            30943869-30944072,30944155-30944399,30945019-30945877,
            30946070-30946936,30947113-30947562
          Length = 1041

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -1

Query: 136  ESC-RSRTKRNRHDLTA--RKIRGRPENAGPGSSP 41
            ESC R + ++   D+TA   K RGR  N  PG+SP
Sbjct: 906  ESCSRDKARKRSDDVTAMGEKRRGRMHNHEPGASP 940


>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 661 TTLHAWNETPCARRYY 614
           TT  AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,536,579
Number of Sequences: 37544
Number of extensions: 425912
Number of successful extensions: 1241
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)