Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_G09
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 132 6e-32
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 68 2e-12
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 58 2e-09
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 48 2e-06
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 43 7e-05
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 41 3e-04
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 40 5e-04
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 38 0.002
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 38 0.002
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 37 0.004
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 36 0.010
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 36 0.010
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 33 0.040
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 32 0.12
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 27 3.5
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 27 3.5
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 27 3.5
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 8.1
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 132 bits (319), Expect = 6e-32
Identities = 74/153 (48%), Positives = 95/153 (62%), Gaps = 3/153 (1%)
Frame = +3
Query: 267 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQG 443
F DF+ GG+SAAVSKTA APIERVKLL+Q Q + + RYKGI + F R E+G
Sbjct: 27 FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEG 86
Query: 444 LLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXT 623
++S WRGN ANV+RYFPTQALNFAFKDK+K++F G ++ + ++F
Sbjct: 87 VISLWRGNTANVLRYFPTQALNFAFKDKFKKMF-GYKKERDGYAKWFAGNLASGGAAGAA 145
Query: 624 SLCFVYPSTSHVPGLAADV--GKGNGQREFSGL 716
SL FVY LA D K G+R+F+GL
Sbjct: 146 SLLFVYSLDYARTRLANDAKSAKKGGERQFNGL 178
Score = 39.1 bits (87), Expect = 8e-04
Identities = 24/95 (25%), Positives = 43/95 (45%)
Frame = +3
Query: 267 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 446
FA + +GG + A S V ++ + L S + ++++ G+VD + + + GL
Sbjct: 132 FAGNLASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGL 191
Query: 447 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGG 551
+RG +V+ + L F D K V L G
Sbjct: 192 RGLYRGFGPSVVGIVVYRGLYFGMYDTLKPVVLVG 226
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 68.1 bits (159), Expect = 2e-12
Identities = 34/85 (40%), Positives = 54/85 (63%)
Frame = +3
Query: 282 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 461
L+GG++A VS+TAV+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+R
Sbjct: 25 LSGGVAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFR 77
Query: 462 GNFANVIRYFPTQALNFAFKDKYKQ 536
GN N +R FP A+ FA + KQ
Sbjct: 78 GNGTNCLRAFPYGAVQFATFNMLKQ 102
Score = 43.6 bits (98), Expect = 4e-05
Identities = 26/92 (28%), Positives = 44/92 (47%)
Frame = +3
Query: 237 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDA 416
K + AD AF K FL GG + + +T P + ++ QV + YK I A
Sbjct: 217 KFFSNADLTAFQKLFL-GGFTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSA 272
Query: 417 FVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 512
I K +G+ F+RG +N+++ P ++ +
Sbjct: 273 IFHIYKTEGINGFFRGYSSNMLKIIPVMSITW 304
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 58.0 bits (134), Expect = 2e-09
Identities = 32/103 (31%), Positives = 55/103 (53%)
Frame = +3
Query: 273 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLS 452
K +AGG + V+K+ VAP++RVK+L Q H S + A R+ G+ A I GL
Sbjct: 19 KSGIAGGTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHG 77
Query: 453 FWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRY 581
++G+ A + R FP + F ++ ++V + + +T R+
Sbjct: 78 LYQGHTATLYRVFPYAGIKFVAYEQVRRVLIRDPEHETHARRF 120
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/95 (26%), Positives = 49/95 (51%)
Frame = +3
Query: 255 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPK 434
DP F++GGI+ VS+T AP++R+K++L + + + + ++ +
Sbjct: 123 DPKNNVGYFISGGIAGIVSRTCTAPLDRLKVML-ISDTGSKPSPKYPFATLLHTTKVLWN 181
Query: 435 EQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 539
G+ SF+ GN NV++ P ++ F + K+V
Sbjct: 182 RNGIRSFFVGNGINVLKVMPESSIKFGTYEAMKRV 216
Score = 41.9 bits (94), Expect = 1e-04
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = +3
Query: 288 GGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 467
G +S + T V P+ ++ LQ Q S A Y G +D F + K +G ++G
Sbjct: 342 GALSGSTGATIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGL 398
Query: 468 FANVIRYFPTQALNFAFKDKYKQ 536
N+++ P+ A+++ + K+
Sbjct: 399 SPNLLKVAPSVAISYLVYENCKK 421
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = +3
Query: 279 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSF 455
+LAGG++ +V++ + P++ +K +Q +S+ Q K I+ + + + K G+ +
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGY 287
Query: 456 WRGNFANVIRYFPTQALNFAFKDKYKQVFLG 548
+RG ++ FP A + + K+ ++G
Sbjct: 288 YRGVLVGILGMFPYSATDLGTFEGLKRTWIG 318
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 42.7 bits (96), Expect = 7e-05
Identities = 27/96 (28%), Positives = 52/96 (54%)
Frame = +3
Query: 282 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 461
++GG+S A++ + P++ VK LLQ + S I ++ KG +D I G+ SF++
Sbjct: 209 ISGGLSGAIASSLTTPLDVVKTLLQTRG-SSSIPEVRKCKGSLDVVRFIYNYGGIPSFFK 267
Query: 462 GNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQ 569
G ++ P A+++A + K++ + V K +Q
Sbjct: 268 GIRPRMVVAMPATAVSWAAYEAGKEILI-RVSKTSQ 302
Score = 39.9 bits (89), Expect = 5e-04
Identities = 22/94 (23%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Frame = +3
Query: 282 LAGGISAAVSKTAVAPIERVKLLLQVQH-VSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 458
LAG S + + + P++ +K +Q+ + VS+ ++ + IV++ ++I +G+ S W
Sbjct: 24 LAGAFSGILEHSVMYPVDAIKTRMQMLNGVSRSVSGN-----IVNSVIKISSTEGVYSLW 78
Query: 459 RGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDK 560
RG + ++ P+ A+ F+ + +K D+
Sbjct: 79 RGISSVIMGAGPSHAIYFSVLEFFKSKINASPDR 112
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 40.7 bits (91), Expect = 3e-04
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Frame = +3
Query: 273 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQR---YKGIVDAFVRIPKEQG 443
KD +AGG + S VAP++ VK Q Q + G + + I +G
Sbjct: 7 KDAIAGGAAGLASSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEG 66
Query: 444 LLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKK 563
+ +RG ++ Y P+ ++ F +K K +F GV+KK
Sbjct: 67 IAGLYRGVGPMMLGYLPSWSIYFVVYEKCKVLF--GVNKK 104
Score = 29.5 bits (63), Expect = 0.66
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +3
Query: 381 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDK 560
A Y DAF +I K +GL +F+RG F ++ + F + +K K
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSLFGTLHV-GIQFPLYEYFKSFLDDFFGK 283
Query: 561 KTQF 572
K+ F
Sbjct: 284 KSNF 287
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 39.9 bits (89), Expect = 5e-04
Identities = 26/96 (27%), Positives = 43/96 (44%)
Frame = +3
Query: 255 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPK 434
D + F F AG ++ + P++ VK +Q+ V K Y G D +I K
Sbjct: 4 DNIPFPVTFAAGAVAGISEVLTLYPLDVVKTRMQLS-VGKS-----DYNGTFDCLKKIVK 57
Query: 435 EQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 542
+G +RG ++ P +AL FA D Y +++
Sbjct: 58 NEGPHRLYRGILPPILMEAPKRALKFASNDTYSKLW 93
Score = 34.3 bits (75), Expect = 0.023
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +3
Query: 270 AKDFLAGGISAAVSKTAVAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGL 446
A L G + V P E +K+ LQ V++ SK Y G VD F +I K++ +
Sbjct: 105 ALSILTGSCAGFTETFVVVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERI 157
Query: 447 LSFWRGNFANVIRYFPTQALNFAFKDKYK 533
L+ + G A + R+ A F K +
Sbjct: 158 LALYNGFEATMWRHVVWNAGYFGVIQKIR 186
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 37.9 bits (84), Expect = 0.002
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +3
Query: 264 AFAKDFLAGGISAAVSKTAVA-PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQ 440
+F KDFLA G+S V++ V P + VK+ LQ Q I Y +D +I K +
Sbjct: 16 SFTKDFLA-GVSGGVAQVLVGQPFDCVKVRLQSQSNVSPI-----YNNALDCVKKISKNE 69
Query: 441 GLLSFWRG 464
GL +F++G
Sbjct: 70 GLAAFYKG 77
Score = 34.7 bits (76), Expect = 0.017
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +3
Query: 258 PVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKE 437
PV + +++G IS + V P+E V++ LQ+Q K + Y G D +I +
Sbjct: 109 PVTMPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQ 163
Query: 438 QGLLSFWRG 464
GL +G
Sbjct: 164 YGLSGIMKG 172
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/87 (24%), Positives = 39/87 (44%)
Frame = +3
Query: 279 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 458
FL G ++ ++ PI+ VK +Q ++A + YK + +I + GLL FW
Sbjct: 207 FLVGSVAGIITVYCTQPIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFW 260
Query: 459 RGNFANVIRYFPTQALNFAFKDKYKQV 539
G + R + + F +K ++
Sbjct: 261 SGATPRLARLILSGGIVFTVYEKVMEI 287
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 36.7 bits (81), Expect = 0.004
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 279 FLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSF 455
FL+GG++A + T P E +K Q+Q ++K + + YK + AF I + +G+
Sbjct: 27 FLSGGLAACGAVTLTNPFEVIKTRFQLQGQLTKLDPSKRIYKSVGQAFSLIARHEGIRGL 86
Query: 456 WRG 464
RG
Sbjct: 87 QRG 89
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 35.5 bits (78), Expect = 0.010
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Frame = +3
Query: 216 VKIT*SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVS----KQIA 383
V +T +N SN P + F+AGG++ + A AP++ VK LQ KQ A
Sbjct: 32 VLLTKANNASNERAPPPLSH-FIAGGVAGMLGAIATAPLDVVKTRLQSDFYKDRFLKQTA 90
Query: 384 ADQ-----RYKGIVDAFV---RIPKEQGLLSFWRGNFANVIRYFPTQALNF 512
+ Y+ +D + + +G + +RG N+I P +++NF
Sbjct: 91 KSKSPLTAAYRHFMDTCIILKNVKVHEGTRALFRGLGPNLIGTIPARSINF 141
Score = 30.3 bits (65), Expect = 0.38
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = +3
Query: 291 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 470
GI+ ++ P E V+ L+ S I +Y G++ F + EQG++ + G
Sbjct: 280 GIAKFMAAGIAYPHEVVRTRLRQ---SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLT 336
Query: 471 ANVIRYFPTQALNF 512
A+++R P + F
Sbjct: 337 AHLLRVVPNACILF 350
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 35.5 bits (78), Expect = 0.010
Identities = 22/86 (25%), Positives = 39/86 (45%)
Frame = +3
Query: 282 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 461
LAGGIS+ + + +AP + +K+ +Q+ S + F +++G+ + WR
Sbjct: 21 LAGGISSVICRFMIAPFDVIKIRMQITQSS-----------LRPVFKETVQKEGVRALWR 69
Query: 462 GNFANVIRYFPTQALNFAFKDKYKQV 539
GN + Y A F K K +
Sbjct: 70 GNVVAELLYLVYGAAEFVAFSKLKHL 95
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +3
Query: 282 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 461
L+G I+ A SK + P++ V LQ YK D F+ I + G+ +R
Sbjct: 197 LSGVIAGAGSKAIMFPVDTVVKTLQT--------FPSNYKSFKDCFLSIYRNSGIKGLYR 248
Query: 462 GNFANVIRYFP 494
G ++++ P
Sbjct: 249 GLSVSMLKVAP 259
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 33.5 bits (73), Expect = 0.040
Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 6/104 (5%)
Frame = +3
Query: 273 KDFLAGGISAAVSKT--AVAPIERVKLLLQVQHVSK-QIAADQRYKGIVDAFVRIPKEQG 443
KD L GG + V K P + +QV K + A K + D + G
Sbjct: 167 KDHLVGGCADGVIKVWDLSTPNSAIISRMQVDRARKGEAALIWAVKSLRDGTIVSADSSG 226
Query: 444 LLSFWRGNFANVIRYFP---TQALNFAFKDKYKQVFLGGVDKKT 566
+ FW G F + + F AL VF G+D+KT
Sbjct: 227 AVKFWNGKFFTLSQSFKLHLADALCLGVSANGDMVFSSGIDRKT 270
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 31.9 bits (69), Expect = 0.12
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = -1
Query: 702 HAXHFPYRHRRRDRVRAKSRGTRSTERWLRRHHRRPDYQRSNARTASSCQHRR 544
H P R R RDR SR +RS R HR DY RS ++ + RR
Sbjct: 140 HQSRSPVRSRDRDR---SSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRR 189
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 27.1 bits (57), Expect = 3.5
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = +3
Query: 282 LAGGISAAVSKTAVAPIERVKLLLQV--QHVSKQIAADQRYKGIVDAFVRIPKEQGLLSF 455
+AG + +S T V+PIE + +Q H A + + + D + ++G+L+
Sbjct: 141 IAGASARTISATIVSPIELFRTRVQAVGGHYPPGHAREIANE-VFDGLKLMIHQKGILNL 199
Query: 456 WRGNFANVIRYFPTQALNFAFKDKYKQVFLG 548
W G + R P A + ++ + LG
Sbjct: 200 WSGVSVTLWRDVPFSAFYWWSYERIRLFLLG 230
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 3.5
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 2/114 (1%)
Frame = +3
Query: 237 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDA 416
K L P + L G ++ + +A+ P++ +K QV Y G +
Sbjct: 13 KTLQLYTPQYYGLCTLGGLLACGTTHSAITPLDLIKCRKQVN--------PNIYPGNIAG 64
Query: 417 FVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKD--KYKQVFLGGVDKKTQF 572
F I ++GL + G +I Y + F + K+K L G K ++
Sbjct: 65 FKTILSKEGLRGLYTGGMPTLIGYSLQGCGKYGFYELFKHKYSTLVGAQKAHEY 118
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.1 bits (57), Expect = 3.5
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -1
Query: 699 AXHFPYRHRRRDRVRAKSRGTRSTERWLRRHHRRPD--YQRSNARTASSCQHRR 544
A + Y + RDR R+ SR R +HRR D Y RSN R +HRR
Sbjct: 324 ARYRQYYNSNRDRKRSSSRSDD------REYHRRSDGRYDRSNYR--DDYRHRR 369
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 421 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMGATAV 314
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,212,899
Number of Sequences: 5004
Number of extensions: 61047
Number of successful extensions: 199
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -