Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_G01
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.27 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.63 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.84 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.4  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    27   3.4  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    27   4.5  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    26   5.9  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    26   7.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -1

Query: 701 PPPPPGXXGFXPPPXGXXPXKXPXG 627
           PPPPPG  G  PPP    P     G
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 702 PPPPPXXXGVXPPP 661
           PPPPP   G  PPP
Sbjct: 764 PPPPPGVAGAGPPP 777


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 425  PGPESVVPAVLHPRLAVPRQASTSVPR-TPAKCCSPTPLRSNSVVCRSNS 279
            P P S  P+V  PR +VP   S + P  T +   S  P R++  V RS S
Sbjct: 1240 PAPSSEAPSVSTPRSSVPSPHSNASPSPTSSSMASAAPARTS--VSRSKS 1287


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 707 GXPPPPPGXXGFXPPPXGXXP 645
           G PPPPP   GF PP     P
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPP 27



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 708 GXPPPPPXXXGVXPP 664
           G PPPPP   G  PP
Sbjct: 7   GNPPPPPPPPGFEPP 21


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 165 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 67
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +1

Query: 109 RMRKRNITVPHDRLAPRNVRSGLPPDSKIVVNLTLHLRHANIRESEST 252
           R+R RNIT+  D++ PR + +   P   +V++L   L H+  R S +T
Sbjct: 279 RLRIRNITLCADKI-PRPLLNSKLPRKTLVLDLDETLIHSVSRGSRTT 325


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -1

Query: 221 LKCRVRLTTILESGGSPDRTLRGASRS*GTVMLRFRI 111
           LK +   TT +E GG   +TLR    S   V LR RI
Sbjct: 804 LKIQPLRTTSMEPGGETSQTLRVHGPSGSQVKLRLRI 840


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -1

Query: 425 PGPESVVPAVLH-PRLAVPRQASTSVPRTPAKCCSPTPLRSNS 300
           P P+S+ P++LH P L    ++++S P+  +  CS TP   NS
Sbjct: 535 PPPKSISPSILHKPSL----ESASSTPKISS--CSSTPKPFNS 571


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -3

Query: 411 RSPRRVAPAFSSTTSGXHKRSEDTSQVLQPHSPAFQLSRLSIQ 283
           RS R    + +S++SG   +   TSQ+++  SP+ + + L +Q
Sbjct: 15  RSKRHQNLSDASSSSGSFSKKSSTSQLVRTGSPSVEPTALYLQ 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,477
Number of Sequences: 5004
Number of extensions: 56861
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)