Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_G01
(851 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 45 1e-06
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 42 7e-06
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 42 1e-05
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 41 1e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 41 2e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 40 2e-05
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 38 9e-05
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 38 9e-05
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 38 9e-05
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 38 9e-05
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 38 9e-05
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 38 9e-05
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 38 9e-05
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 38 9e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 36 4e-04
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 36 6e-04
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 35 0.001
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 34 0.002
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 33 0.003
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 26 0.51
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 4.7
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 22 6.2
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 44.8 bits (101), Expect = 1e-06
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWXPDVVLLN--AGATRRGLRSRARVXNNGS 442
++ W D +L WN E+G L V SE +W PD+VL N G L ++A + G
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNADGNYEVTLMTKATLKYTGD 145
Query: 443 VSW 451
VSW
Sbjct: 146 VSW 148
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 41.9 bits (94), Expect = 7e-06
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWXPDVVLLN--AGATRRGLRSRARVXNNGS 442
++ W D +L WN ++G T V SE +W PD+VL N G + ++A + + G
Sbjct: 73 VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHHTGK 132
Query: 443 VSW 451
V W
Sbjct: 133 VVW 135
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.5 bits (93), Expect = 1e-05
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWXPDVVLLN--AGATRRGLRSRARVXNNGS 442
++ +W D +L W E+G L V S+ +W PD+VL N G L ++A + + G
Sbjct: 81 VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGL 140
Query: 443 VSW 451
V W
Sbjct: 141 VEW 143
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 41.1 bits (92), Expect = 1e-05
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWXPDVVLLNAGATRRGL--RSRARVXNNGS 442
L+ W D + W+ E+G T L V SE +W PD+VL N G+ ++A + G
Sbjct: 73 LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGK 132
Query: 443 VSW 451
V W
Sbjct: 133 VLW 135
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 40.7 bits (91), Expect = 2e-05
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWXPDVVLLN--AGATRRGLRSRARVXNNGS 442
++ +W D +L W+ E+G L V S+ +W PD+VL N G L ++A + G
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 136
Query: 443 VSW 451
V W
Sbjct: 137 VEW 139
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 40.3 bits (90), Expect = 2e-05
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWXPDVVLLN--AGATRRGLRSRARVXNNGS 442
++ +W D +L W E+G L V S+ +W PD+VL N G L ++A V +G
Sbjct: 81 VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYNNADGNYEVTLMTKATVYYSGL 140
Query: 443 VSW 451
V W
Sbjct: 141 VVW 143
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 38.3 bits (85), Expect = 9e-05
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWXPDVVLLNA 388
L++ W+D L WN E+ G ++ +LW PD+++ N+
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 38.3 bits (85), Expect = 9e-05
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWXPDVVLLNA 388
L++ W+D L WN E+ G ++ +LW PD+++ N+
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 38.3 bits (85), Expect = 9e-05
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWXPDVVLLNA 388
L++ W+D L WN E+ G ++ +LW PD+++ N+
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 38.3 bits (85), Expect = 9e-05
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWXPDVVLLNA 388
L++ W+D L WN E+ G ++ +LW PD+++ N+
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 38.3 bits (85), Expect = 9e-05
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWXPDVVLLNA 388
L++ W+D L WN E+ G ++ +LW PD+++ N+
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 38.3 bits (85), Expect = 9e-05
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWXPDVVLLNA 388
L++ W+D L WN E+ G ++ +LW PD+++ N+
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 38.3 bits (85), Expect = 9e-05
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWXPDVVLLNA 388
L++ W+D L WN E+ G ++ +LW PD+++ N+
Sbjct: 107 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 146
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 38.3 bits (85), Expect = 9e-05
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWXPDVVLLNA 388
L++ W+D L WN E+ G ++ +LW PD+++ N+
Sbjct: 107 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 146
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 36.3 bits (80), Expect = 4e-04
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWXPDVVLLN--AGATRRGLRSRARVXNNGS 442
L+ W D +L W+ ++G + +++W PD+VL N G +S + NG
Sbjct: 79 LRFIWTDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPNGD 138
Query: 443 VSW 451
V W
Sbjct: 139 VLW 141
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 35.5 bits (78), Expect = 6e-04
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +2
Query: 284 WIDKRLSWNAGEW-GCSTWLVSSERLWXPDVVLLNAGATRRG---LRSRARVXNNGSVSW 451
W D L WNA E+ G V R+W PD +L N + + + V + G V W
Sbjct: 62 WTDHHLKWNASEFAGIRVIRVPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVW 121
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 34.7 bits (76), Expect = 0.001
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWXPDVVLLNA 388
L++ W D + WN ++G L + RLW PDV++ N+
Sbjct: 76 LKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNS 115
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 33.9 bits (74), Expect = 0.002
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWXPDVVLLNAG 391
+ + W D LSW ++ G + V S+ +W PD+ + N+G
Sbjct: 95 MTLMWTDSHLSWKPSDFDGINYIYVKSDDIWVPDISVYNSG 135
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 33.5 bits (73), Expect = 0.003
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRDXXXXXXXXXXXXCI*DMLTFVSPSPPVRIQADL----QMNW 286
N +++S ++D+LL YD + M+ + P V + + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 287 IDKRLSWNAGEWGCSTWLVSSERLWXPDVVLLN 385
+D+RL++ G+ + + R+W PD N
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 25.8 bits (54), Expect = 0.51
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 275 QMNWIDKRLSWNAGEWGCSTWLVSSERLWXPDVVLLN 385
+ +W D RLS+ S + ER+W PD N
Sbjct: 90 RQSWRDSRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 4.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 337 PSAAAPLPCVPTQS 296
PSA AP+P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 22.2 bits (45), Expect = 6.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -1
Query: 335 KCCSPTPLRSNSVVCRSNSFEDLPVFAPVDS 243
KC + +N+V C E++P P+D+
Sbjct: 766 KCYNDRTWNTNAVDCSGLGVEEIPRRIPMDA 796
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,379
Number of Sequences: 438
Number of extensions: 6540
Number of successful extensions: 55
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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