Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_F22
(887 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 52 7e-09
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 51 1e-08
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 49 7e-08
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 49 7e-08
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 48 1e-07
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 48 2e-07
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 48 2e-07
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 47 2e-07
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 47 3e-07
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 47 3e-07
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 46 5e-07
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 46 5e-07
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 46 5e-07
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 46 6e-07
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 46 6e-07
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 45 8e-07
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 44 2e-06
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 44 2e-06
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 44 2e-06
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 43 3e-06
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 43 3e-06
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 43 4e-06
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 35 9e-04
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 29 0.057
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 3.7
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 8.6
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 52.0 bits (119), Expect = 7e-09
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Frame = +2
Query: 62 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESEST 220
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 221 VRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL-RAR 394
+ L+ W D + W+ E+G T L V SE +W PD+VL N A G + +A
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAI 126
Query: 395 VSNNGSVSW 421
+ G V W
Sbjct: 127 LHYTGKVLW 135
Score = 25.0 bits (52), Expect = 0.92
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 474 PXNMQTCTFKFGSRMHNSXEMD 539
P + QTC KFGS ++ ++D
Sbjct: 153 PFDQQTCFMKFGSWTYDGIQID 174
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 51.2 bits (117), Expect = 1e-08
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Frame = +2
Query: 86 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 253
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 254 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAAT---TAGDYALRARVSNNGSVSWI 424
+D+RL++ G+ + + R+W+PD N + T R+ +G V +
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTITSPNKFVRLYQDGRVLYS 121
Query: 425 KRLDISTPISMQLDNWPXE 481
RL I M L+N+P +
Sbjct: 122 SRLTIKAGCPMNLENFPMD 140
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 48.8 bits (111), Expect = 7e-08
Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Frame = +2
Query: 107 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 271
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 272 WNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDIST 445
WN E+ G ++ +LW+PD+++ N+A G Y V++NGS ++ +
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKS 177
Query: 446 PISMQLDNWPXEHADLHVQVRF 511
+ + +P + D H ++F
Sbjct: 178 TCKIDITWFPFD--DQHCDMKF 197
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 474 PXNMQTCTFKFGSRMHNSXEMDFVI 548
P + Q C KFGS ++ ++D V+
Sbjct: 187 PFDDQHCDMKFGSWTYDGNQVDLVL 211
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 48.8 bits (111), Expect = 7e-08
Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Frame = +2
Query: 107 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 271
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 272 WNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDIST 445
WN E+ G ++ +LW+PD+++ N+A G Y V++NGS ++ +
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKS 177
Query: 446 PISMQLDNWPXEHADLHVQVRF 511
+ + +P + D H ++F
Sbjct: 178 TCKIDITWFPFD--DQHCDMKF 197
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 474 PXNMQTCTFKFGSRMHNSXEMDFVI 548
P + Q C KFGS ++ ++D V+
Sbjct: 187 PFDDQHCDMKFGSWTYDGNQVDLVL 211
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 48.0 bits (109), Expect = 1e-07
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Frame = +2
Query: 197 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 370
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 371 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXEHADLHVQVRF 511
G Y V++NGS ++ + + + +P + D H ++F
Sbjct: 85 GTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPFD--DQHCDMKF 129
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 474 PXNMQTCTFKFGSRMHNSXEMDFVI 548
P + Q C KFGS ++ ++D V+
Sbjct: 119 PFDDQHCDMKFGSWTYDGNQVDLVL 143
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 47.6 bits (108), Expect = 2e-07
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Frame = +2
Query: 80 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 238
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 239 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGS 412
++ +W D +L W+ E+G L V S+ +WRPD+VL NA A +A ++ G
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 136
Query: 413 VSW 421
V W
Sbjct: 137 VEW 139
Score = 25.0 bits (52), Expect = 0.92
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 474 PXNMQTCTFKFGSRMHNSXEMD 539
P + QTC KFGS ++ ++D
Sbjct: 157 PFDEQTCVMKFGSWTYDGFQVD 178
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 47.6 bits (108), Expect = 2e-07
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 12/136 (8%)
Frame = +2
Query: 50 LTCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRE 208
++C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 5 ISCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKN 64
Query: 209 SESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGDYAL 385
T + ++ W D +L WN ++G T V SE +W PD+VL N A G+Y +
Sbjct: 65 QIMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA---DGNYEV 119
Query: 386 ----RARVSNNGSVSW 421
+A + + G V W
Sbjct: 120 TIMTKAILHHTGKVVW 135
Score = 23.0 bits (47), Expect = 3.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 474 PXNMQTCTFKFGSRMHNSXEMD 539
P + QTC KFGS ++ +D
Sbjct: 153 PFDEQTCFMKFGSWTYDGYTVD 174
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 47.2 bits (107), Expect = 2e-07
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Frame = +2
Query: 197 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 370
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 371 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXEHADLHVQVRF 511
G Y V+++GS ++ + M + +P + D H ++F
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFD--DQHCDMKF 129
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 474 PXNMQTCTFKFGSRMHNSXEMDFVI 548
P + Q C KFGS ++ ++D V+
Sbjct: 119 PFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 46.8 bits (106), Expect = 3e-07
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Frame = +2
Query: 197 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 370
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 371 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXEHADLHVQVRF 511
G Y V+++GS ++ + M + +P + D H ++F
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFD--DQHCDMKF 129
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 474 PXNMQTCTFKFGSRMHNSXEMDFVI 548
P + Q C KFGS ++ ++D V+
Sbjct: 119 PFDDQHCDMKFGSWTYDGNQVDLVL 143
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 46.8 bits (106), Expect = 3e-07
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Frame = +2
Query: 107 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLS 271
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 272 WNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 421
WN E+G L V SE +W PD+VL N A G+Y + +A + G VSW
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSW 148
Score = 25.0 bits (52), Expect = 0.92
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 474 PXNMQTCTFKFGSRMHNSXEMD 539
P + Q+C KFGS +N ++D
Sbjct: 166 PFDEQSCIMKFGSWTYNGAQVD 187
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 46.0 bits (104), Expect = 5e-07
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Frame = +2
Query: 197 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 370
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 371 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXEHADLHVQVRF 511
G Y V+++GS ++ + + + +P + D H ++F
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFD--DQHCDMKF 129
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 474 PXNMQTCTFKFGSRMHNSXEMDFVI 548
P + Q C KFGS ++ ++D V+
Sbjct: 119 PFDDQHCDMKFGSWTYDGNQVDLVL 143
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 46.0 bits (104), Expect = 5e-07
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Frame = +2
Query: 107 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 271
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 272 WNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 421
W E+G L V S+ +WRPD+VL NA A +A + + G V W
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEW 143
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 474 PXNMQTCTFKFGSRMHNSXEMD 539
P + QTC KFGS ++ ++D
Sbjct: 161 PFDEQTCVLKFGSWTYDGFKVD 182
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 46.0 bits (104), Expect = 5e-07
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Frame = +2
Query: 41 RFLLTCAIASAAE--CENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-N 199
R+ L AIA AA + +++ LL TY+ E P ++ +V++ L L +
Sbjct: 3 RWTLMAAIALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIID 62
Query: 200 IRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAG 373
+ E + L++ W D + WN ++G L + RLW+PDV++ N+A G
Sbjct: 63 VDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDG 122
Query: 374 DYALRARVSNNGSVSWI 424
Y V NNG+ ++
Sbjct: 123 TYPTNVVVKNNGTCLYV 139
Score = 22.2 bits (45), Expect = 6.5
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 474 PXNMQTCTFKFGSRMHNSXEMD 539
P + Q C KFGS ++ ++D
Sbjct: 156 PFDDQRCEMKFGSWTYDGFQLD 177
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 45.6 bits (103), Expect = 6e-07
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Frame = +2
Query: 197 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 370
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 371 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXEHADLHVQVRF 511
G Y V+++GS ++ + + + +P + D H ++F
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFD--DQHCDMKF 129
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 474 PXNMQTCTFKFGSRMHNSXEMDFVI 548
P + Q C KFGS ++ ++D V+
Sbjct: 119 PFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 45.6 bits (103), Expect = 6e-07
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Frame = +2
Query: 197 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 370
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 371 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPXEHADLHVQVRF 511
G Y V+++GS ++ + + + +P + D H ++F
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFD--DQHCDMKF 129
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 474 PXNMQTCTFKFGSRMHNSXEMDFVI 548
P + Q C KFGS ++ ++D V+
Sbjct: 119 PFDDQHCDMKFGSWTYDGNQVDLVL 143
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 45.2 bits (102), Expect = 8e-07
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +2
Query: 80 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 244
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 245 MNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL 346
+ W L+W + E+ ++ V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 44.0 bits (99), Expect = 2e-06
Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Frame = +2
Query: 86 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 253
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 254 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNN 406
D RL++ G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHS 123
Query: 407 GSVSWIKRLDISTPISMQLDNWPXEHADLHVQV 505
GS++ RL I+ M L +P + H+++
Sbjct: 124 GSITRSIRLTITASCPMNLQYFPMDRQLCHIEI 156
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 44.0 bits (99), Expect = 2e-06
Identities = 34/135 (25%), Positives = 67/135 (49%), Gaps = 10/135 (7%)
Frame = +2
Query: 107 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 271
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 272 WNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSWIKRLD 436
W E+G L V S+ +WRPD+VL N A G+Y + +A V +G V W
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVWQPPAV 148
Query: 437 ISTPISMQLDNWPXE 481
+ S+ ++ +P +
Sbjct: 149 YKSSCSIDVEFFPYD 163
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 44.0 bits (99), Expect = 2e-06
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Frame = +2
Query: 161 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 337
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 338 VVLLNAAATTAGDYALRAR--VSNNGSVSWIKRLDISTPISMQLDNWPXE 481
+L N A + VS+ G V W+ + + ++ +P +
Sbjct: 92 TILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVEFFPFD 141
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 43.2 bits (97), Expect = 3e-06
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 8/137 (5%)
Frame = +2
Query: 95 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWID 259
++++++++LL Y+ P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 260 KRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYAL---RARVSNNGSVSWIKR 430
RLS+ S + ER+WRPD N + + R+S +G + + R
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMR 155
Query: 431 LDISTPISMQLDNWPXE 481
L I M+L N+P +
Sbjct: 156 LTIKAKCPMELRNFPMD 172
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 43.2 bits (97), Expect = 3e-06
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Frame = +2
Query: 158 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWR 331
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 332 PDVVLLNAAATTAGDYALRAR----VSNNGSVSWI 424
PD+VL N A G+Y +R + + NG V W+
Sbjct: 111 PDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLWV 142
Score = 25.0 bits (52), Expect = 0.92
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 465 TIGPXNMQTCTFKFGSRMHNSXEMDFVI 548
T P + QTC KFGS N ++ +
Sbjct: 156 TYFPFDQQTCIMKFGSWTFNGDQVSLAL 183
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 42.7 bits (96), Expect = 4e-06
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Frame = +2
Query: 86 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 253
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 254 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNN 406
D RL++ G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHS 123
Query: 407 GSVSWIKRLDISTPISMQLDNWPXEHADLHVQV 505
GS++ RL I+ M L +P + H+++
Sbjct: 124 GSITRSIRLTITASCPMNLQYFPMDRQLCHIEI 156
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 35.1 bits (77), Expect = 9e-04
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Frame = +2
Query: 251 WIDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSN 403
W D RL++ G T V SE +W PD +N ATT+ ++ R+ +
Sbjct: 6 WTDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHH 61
Query: 404 NGSVSWIKRLDISTPISMQLDNWPXEHADLHVQV 505
+GS++ RL I+ M L +P + H+++
Sbjct: 62 SGSITRSIRLTITASCPMNLQYFPMDRQLCHIEI 95
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 29.1 bits (62), Expect = 0.057
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 474 PXNMQTCTFKFGSRMHNSXEMDFVIDKRXYSM 569
P + C FGS +H+ E++ +DK+ + M
Sbjct: 177 PYDTHRCRINFGSWVHSGEEVNIFLDKKGFHM 208
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 23.0 bits (47), Expect = 3.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 103 GQ*CCVFAFCRTSYSTSEEKPVTRII 26
G+ CC F T Y + K VT+ I
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQCI 627
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 304 PSAAAPFPCVPTQS 263
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,452
Number of Sequences: 438
Number of extensions: 4431
Number of successful extensions: 76
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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