Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_F18
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   0.64 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.94 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   1.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.2  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   2.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.8  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   3.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect(2) = 0.64
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 713 PPPPPPP 733
           PPPPPPP
Sbjct: 311 PPPPPPP 317



 Score = 23.8 bits (49), Expect(2) = 0.64
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 716 PPPPPPP 736
           PPPPPPP
Sbjct: 337 PPPPPPP 343


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +2

Query: 707 FXPPPPPPPP 736
           F PPPPPPPP
Sbjct: 944 FPPPPPPPPP 953


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 713 PPPPPPPPXXGXF 751
           PPPPPPPP    F
Sbjct: 306 PPPPPPPPPSNDF 318


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 707 FXPPPPPPPP 736
           + PPPPPPPP
Sbjct: 187 YNPPPPPPPP 196



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 713 PPPPPPPP 736
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 707 FXPPPPPPPP 736
           + PPPPPPPP
Sbjct: 368 YSPPPPPPPP 377


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 713 PPPPPPPP 736
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 713  PPPPPPPP 736
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 713 PPPPPPPP 736
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 713 PPPPPPPP 736
           PPPPPPPP
Sbjct: 775 PPPPPPPP 782



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 713 PPPPPPPP 736
           PPPPPPPP
Sbjct: 776 PPPPPPPP 783



 Score = 22.6 bits (46), Expect(2) = 7.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 719 PPPPPPXXG 745
           PPPPPP  G
Sbjct: 761 PPPPPPPPG 769



 Score = 21.0 bits (42), Expect(2) = 7.6
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 713 PPPPPP 730
           PPPPPP
Sbjct: 732 PPPPPP 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,859,961
Number of Sequences: 5004
Number of extensions: 25373
Number of successful extensions: 220
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)