Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_F15
(862 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 29 1.1
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 1.1
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 27 2.6
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 27 3.4
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 27 3.4
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 27 3.4
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 7.9
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 7.9
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 7.9
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 226 NLHPPAEPEHRRIARHERTGRL 291
NL PAE +HRR+ R +R G L
Sbjct: 235 NLDSPAELKHRRLVRSQRNGPL 256
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +2
Query: 44 TSLINIVAFIPAYRSKRTKIKATTQTTILRVPPLLHDVTLTLRKPTANTCQARTSTHFTG 223
+S++N I + + T+ T + PP+ + P ++ TST T
Sbjct: 1623 SSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITS 1682
Query: 224 KTCIRQRNPNTAASP-DTNAP 283
T + P T+++ +T+ P
Sbjct: 1683 STVVNSSTPITSSTALNTSTP 1703
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 44 TSLINIVAFIPAYRSKRTKIKATTQTTILRVPPLLHDVTLTLRKPT-ANTCQARTSTHFT 220
T L +A IP T+ + T +T+L + L H V + L +P+ N + + +T
Sbjct: 428 TELQKWIADIPMELQWNTRSQKETSSTVLLLHMLYHSVIIILNRPSDDNYLKLDNTERYT 487
Query: 221 GKTC 232
+ C
Sbjct: 488 FEIC 491
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 371 KQANKKASKFPWGRKIDTSEVVVTCKIRRPVRS 273
K N+ + +FP+ KI TCK +P RS
Sbjct: 139 KNWNEASRRFPYDYKIFFPNKCSTCKFEKPARS 171
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 27.1 bits (57), Expect = 3.4
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = +1
Query: 502 STSPKTRHLGSS*STNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGS 681
+T+P R + + STN K S SL G+ + + L + D L
Sbjct: 235 TTNPLIRKVSFTGSTNVGKILAKQSSSTLKKLSLELGGNAPFIVFEDADLEKAADALMAC 294
Query: 682 RFRSGGRFC 708
+FR G+ C
Sbjct: 295 KFRGSGQTC 303
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 586 SSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLL 726
SS+ +L T+ +TS+ H + L+G+ GRFC A L+
Sbjct: 134 SSDKALLTRPATSRRRCCHPTCTRITLRLAGNCLHCNGRFCAAHRLM 180
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +1
Query: 136 STSLTRCYSHTEEANR---EHLSSTHKHALHRKNLHPPAEPEHRRIARHER 279
STS +R S R E S H+H HR++ EP ++RH R
Sbjct: 122 STSRSRSTSPANRHRRKEKERTRSNHRHGSHRRH-----EPYRTHLSRHHR 167
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 515 KHVISDPPDPLTVLLGTSSTGH 580
+H++ +PP PLTVL GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 172 EANREHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGRLILQVTTTSD 318
E N ++L + K +L PP + R E+TG L Q T+TS+
Sbjct: 60 EINDKNLEA-EKDIESNLSLRPPEDDLDSRSIESEQTGTLSKQTTSTSE 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,836
Number of Sequences: 5004
Number of extensions: 64563
Number of successful extensions: 215
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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