Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_F15
(862 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798 33 0.22
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 32 0.68
10_08_0793 - 20614583-20614897,20615417-20615660,20617713-206178... 31 1.6
08_02_0707 - 20212190-20214592 31 1.6
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331... 29 3.6
08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100... 29 3.6
01_06_0140 - 26881282-26881290,26882027-26882128,26882816-268829... 29 6.3
01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969... 28 8.3
01_06_0475 + 29610268-29610711 28 8.3
>12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798
Length = 333
Score = 33.5 bits (73), Expect = 0.22
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +3
Query: 294 LTGHDDFRCVNFSSPRK-LACFLVCLL--AGARSHRTCSVIGTTSIKRHDTRTLSSWPPV 464
+ G D + +FSS + C ++C G + ++ S+ TT+ HDT T +S PP+
Sbjct: 142 MEGVHDQQASSFSSKEDWVLCRVICKRKSGGGATSKSRSLTTTTTTIVHDTSTPTSSPPL 201
Query: 465 TTFPILRTEWKAVDVAQNTSS 527
P++ T + + NTSS
Sbjct: 202 P--PLMDTTLAQLQASMNTSS 220
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 31.9 bits (69), Expect = 0.68
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 166 TEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGR 288
+ E EH SS +H HR + H + EHR RH+R R
Sbjct: 778 SSEDEHEHRSSKSRHR-HRDDYHYHEDDEHRSSHRHQRDHR 817
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +1
Query: 106 SHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRR 261
S NY+ S +R H E +R H S HKH L R + EP H R
Sbjct: 725 SDEENYDSEESYKHSR-KKHRSEDSRAHTSDVHKHKLKRHS--KDLEPRHHR 773
>10_08_0793 -
20614583-20614897,20615417-20615660,20617713-20617899,
20618508-20618547,20618699-20618775,20618965-20619091
Length = 329
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/62 (35%), Positives = 28/62 (45%)
Frame = +1
Query: 151 RCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGRLILQVTTTSDVSIF 330
RC+S ++ A L H H ++ L P E E RR +TG L Q DVS
Sbjct: 118 RCHSSSKHAKGSLLLLHHHH--QQQQLQRPNEMETRRAEASTQTGFLRSQGICERDVSSG 175
Query: 331 LP 336
LP
Sbjct: 176 LP 177
>08_02_0707 - 20212190-20214592
Length = 800
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 76 CVSLEENKN*SHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEH 255
C + N SHH +++ S + S TE + +E+ S H H H + H +E H
Sbjct: 539 CCEHHGDANKSHHHDHHHDSSNEESHHNSLTENSCKENHSHCHGHDHHHHHHHDHSE-HH 597
Query: 256 RRIARH 273
++ H
Sbjct: 598 QQSGDH 603
>11_01_0432 +
3313060-3313107,3313610-3313753,3314510-3314662,
3315283-3315792,3315888-3317423,3317505-3317573,
3317742-3317807,3318517-3318640,3319464-3319690
Length = 958
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +1
Query: 601 LATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLLXFVLATSSGLSPVSS 771
L TKG +T+ H P+ FSP S G E+ L + S GL P+S+
Sbjct: 203 LETKGKRLSVTVTHFPMIFSPISSRTFVLPSEGTMAESCLSNHHEDSLSPGLPPIST 259
>08_01_0125 +
1001397-1001865,1002743-1002810,1003359-1003490,
1003649-1003810,1003973-1004260
Length = 372
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/53 (39%), Positives = 25/53 (47%)
Frame = +1
Query: 541 STNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGG 699
S NG R P SS +L +G L+L S F P SG+R RSGG
Sbjct: 200 SANGVISNVTLRQPDSSGGTLTYEGRFELLSLSGS---FMPTENSGTRSRSGG 249
>01_06_0140 -
26881282-26881290,26882027-26882128,26882816-26882924,
26883712-26883860,26883941-26884043,26884635-26884810,
26885004-26885066,26885258-26885346,26885428-26885538,
26885610-26885744,26886415-26886580,26886788-26886856,
26886943-26887230,26888612-26888866
Length = 607
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -3
Query: 293 IRRPVRSCLAMRRCSGSAGGCRFFR*SACLCVLDKCSRL 177
+R R A R C GSAG R R SA V+ + RL
Sbjct: 31 LRPAARLSFAPRWCGGSAGAARARRESAVTSVISRAPRL 69
>01_06_1202 +
35396165-35396260,35396398-35396549,35396694-35396938,
35397044-35398350
Length = 599
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = +3
Query: 345 LACFLVCLLAGARSHRTCSVIGTTSIKR----HDTRTLSSWPPVTTFPILRTEWKAVDVA 512
L+C ++ LLAGA H ++ T +KR H+ T++ P T + + ++V
Sbjct: 13 LSCSVLALLAGAEVHHHEFIVQETPVKRLCKTHNVITVNGQLPGPTLEVREGDTVVINVV 72
Query: 513 QNTSSRILL 539
+ + +
Sbjct: 73 NHAQYNVTI 81
>01_06_0475 + 29610268-29610711
Length = 147
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 577 SPFSSNPSLATKGSTSKLTLRHSPLSFSPD 666
SP SS+P S+++ TL HSP S SPD
Sbjct: 54 SPMSSSPP---SRSSTRATLTHSPSSASPD 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,702,730
Number of Sequences: 37544
Number of extensions: 476417
Number of successful extensions: 1447
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1447
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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