Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_F14
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    29   0.67 
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    27   2.7  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   4.8  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    26   6.3  

>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +3

Query: 222 ESDLHRANTGRSSNELDRQTXXLERMGSGAASTWLVSSERXWRPXVV 362
           E +L  ++TG ++++L +QT   E MG  A   WL S    + P ++
Sbjct: 131 EKELEASSTGDATSDLSKQTFDSENMGEHA---WLKSDRDYYYPELL 174


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 394 SPPVVAPAFSSTTSGLHXRSEDTSQVDAAPLPM 296
           +PP+     S  T      SE TS VD AP P+
Sbjct: 599 TPPISVEPTSIKTIAAEESSEPTSSVDVAPTPV 631


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 396 SPRRWXHPRLAVPXQASTSVPRTPAKWMQPHSP 298
           SP  W  P       AS++ P  PA W QP +P
Sbjct: 422 SPAPWAKP-------ASSAAPSNPAPWQQPAAP 447


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 44  LFCYRXLLTCAIASAAECENATSXSLMIDSLLATYDR 154
           LFC   + T  + S  EC N     +++D+L   Y +
Sbjct: 301 LFCEECIQTALLDSDFECPNCHRKDVLLDTLNPDYQK 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,003
Number of Sequences: 5004
Number of extensions: 33487
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)