Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_F14
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0268 - 2029007-2029464,2029521-2029615,2030815-2031077,203...    29   5.0  
01_01_0190 + 1656376-1656565,1656655-1657388                           29   5.0  
04_03_0961 + 21263735-21263773,21264157-21264279,21266774-212668...    29   6.6  

>11_01_0268 -
           2029007-2029464,2029521-2029615,2030815-2031077,
           2031154-2031279,2031404-2032996
          Length = 844

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 235 WRSDSRMLACLKCRVRLTTILEYGGG 158
           W S  + +ACLK  +++  + +YGGG
Sbjct: 591 WSSALKDIACLKSHLQVLKLFDYGGG 616


>01_01_0190 + 1656376-1656565,1656655-1657388
          Length = 307

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +3

Query: 150 IGTPPPYSKIVVNL-TLHLRHANIRESDLHRANTG--RSSNELD-RQTXXLERMGSGAAS 317
           I  PPP +  V  L T  +RH   R  D+H A  G     + LD       +R G GAA+
Sbjct: 109 IAQPPPSATAVPPLPTCDIRHVGARRGDVHGAAAGPVADLHRLDISSRAKFKRPGGGAAA 168


>04_03_0961 +
           21263735-21263773,21264157-21264279,21266774-21266847,
           21266939-21267095,21267554-21267694,21267739-21267823,
           21268810-21268903,21269041-21269239,21269515-21269549,
           21270076-21270631,21270722-21270882,21271704-21271718,
           21273078-21273330,21273439-21273562,21273688-21273788,
           21274870-21274938,21275060-21275191,21275270-21275404,
           21275489-21275551,21275636-21275881,21276007-21276285
          Length = 1026

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 159 PPPYSKIVVNLTLHLRHANIRESDL 233
           PPPY  I  N  LH RH   +E D+
Sbjct: 64  PPPYIHIETNDFLHRRHKRQKEEDI 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,955,370
Number of Sequences: 37544
Number of extensions: 302459
Number of successful extensions: 706
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)