Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_F14
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016440-6|AAN84798.1|  525|Caenorhabditis elegans Hypothetical ...    31   1.1  
AF016440-5|AAB65904.2|  535|Caenorhabditis elegans Hypothetical ...    31   1.1  

>AF016440-6|AAN84798.1|  525|Caenorhabditis elegans Hypothetical
           protein F29G9.2b protein.
          Length = 525

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 26/71 (36%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
 Frame = -3

Query: 475 IXIGVLXSKRXSRXTEPLX---DTRARRA*SPPVVAPAFSSTTSGLHXRSEDTSQVDAAP 305
           I IG L  +  SR  E      DT    A  PP +AP   S+   L   + D    D AP
Sbjct: 428 IDIGNLEVRTLSRIDEEATSASDTLKESARMPPKIAPPICSS---LVLTNFDNMSEDCAP 484

Query: 304 LPMRSXSXVCR 272
             MRS S  CR
Sbjct: 485 RLMRSASETCR 495


>AF016440-5|AAB65904.2|  535|Caenorhabditis elegans Hypothetical
           protein F29G9.2a protein.
          Length = 535

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 26/71 (36%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
 Frame = -3

Query: 475 IXIGVLXSKRXSRXTEPLX---DTRARRA*SPPVVAPAFSSTTSGLHXRSEDTSQVDAAP 305
           I IG L  +  SR  E      DT    A  PP +AP   S+   L   + D    D AP
Sbjct: 438 IDIGNLEVRTLSRIDEEATSASDTLKESARMPPKIAPPICSS---LVLTNFDNMSEDCAP 494

Query: 304 LPMRSXSXVCR 272
             MRS S  CR
Sbjct: 495 RLMRSASETCR 505


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,177,734
Number of Sequences: 27780
Number of extensions: 214310
Number of successful extensions: 505
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)