Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_F13
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 214 1e-56
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 208 6e-55
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 40 5e-04
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 1.1
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 29 1.1
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 2.7
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 214 bits (523), Expect = 1e-56
Identities = 104/149 (69%), Positives = 116/149 (77%)
Frame = +1
Query: 181 LGQKMLTSSMEXYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 360
+G K L ME YV+KRR+DG H+INL +TWEKLVLAAR + IENPADV VISSRP+G
Sbjct: 28 IGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPYGH 87
Query: 361 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 540
RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV DP D Q I EAS+VNIPV
Sbjct: 88 RAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPV 147
Query: 541 IALCNTDSPLRFVDIAIPCNTKSSHSIGL 627
IALC+TDS L VD+AIP N K SIGL
Sbjct: 148 IALCDTDSILNHVDVAIPINNKGYKSIGL 176
Score = 39.9 bits (89), Expect = 5e-04
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +2
Query: 668 GVLPRDQRWDVVVDLFFYRDPEXSEKDEQQ 757
G + R W+V+ DL+FYRDPE E++E+Q
Sbjct: 190 GNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 208 bits (509), Expect = 6e-55
Identities = 99/150 (66%), Positives = 116/150 (77%)
Frame = +1
Query: 181 LGQKMLTSSMEXYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 360
+G K L M+ YV+KRR+DG H++NL +TWEKLVLAAR + IENPADV V+S+R +G
Sbjct: 27 IGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIENPADVCVVSTRTYGH 86
Query: 361 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 540
RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V DP D Q I EAS+VNIPV
Sbjct: 87 RAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPV 146
Query: 541 IALCNTDSPLRFVDIAIPCNTKSSHSIGLM 630
IALC+TDS L VDIAIP N K SIGL+
Sbjct: 147 IALCDTDSILNHVDIAIPTNNKGRKSIGLI 176
Score = 41.5 bits (93), Expect = 2e-04
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +2
Query: 668 GVLPRDQRWDVVVDLFFYRDPEXSEKDEQ 754
G L R WDV+ DL+FYRDPE E++E+
Sbjct: 189 GTLSRSAPWDVMPDLYFYRDPEEVEREEE 217
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 39.9 bits (89), Expect = 5e-04
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 25/158 (15%)
Frame = +1
Query: 211 EXYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQR-AVLKFAAH 387
+ ++Y +R +G H+I+L +T L A V +I + + GQ+ +V+ A
Sbjct: 72 QPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGIILFIGTRNGQKDSVVAAAKR 130
Query: 388 TGATPIAGRFTPGAFTN--QIQA----------------------AFREPRLLIVLDPAQ 495
I R+ PG TN ++Q ++ P L+++L+P +
Sbjct: 131 ARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQTDKKPSYVFPDLMVILNPLE 190
Query: 496 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKS 609
+ EA ++P I + +TD+ R V IP N S
Sbjct: 191 NKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDS 228
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +1
Query: 250 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 426
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.7 bits (61), Expect = 1.1
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +1
Query: 385 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 549
+ A P G T+ I A F+ +P + ++ D + T A + + L
Sbjct: 29 YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87
Query: 550 CNTDSPLRFVDIAIPCNTKSSHSI 621
C+ +S RF D+A+ NTK +H I
Sbjct: 88 CDRNSK-RFADLAVAANTKFTHFI 110
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 27.5 bits (58), Expect = 2.7
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -1
Query: 513 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGMRGKLQYSTLTEGP**DD 334
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 333 EHISGVLDG 307
H SGV G
Sbjct: 226 LH-SGVFGG 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,385,303
Number of Sequences: 5004
Number of extensions: 69603
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -