Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_F13
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 207 1e-53
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 206 1e-53
09_06_0103 + 20873310-20873382,20873530-20873735 29 6.5
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 29 6.5
04_03_0360 - 14906919-14907764 29 6.5
04_03_0330 - 14496906-14497751 29 6.5
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 207 bits (505), Expect = 1e-53
Identities = 96/150 (64%), Positives = 115/150 (76%)
Frame = +1
Query: 181 LGQKMLTSSMEXYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 360
LG K ME YVYKRR+DG ++INL +TWEKL LAAR +VAIENP D+ V S+RP+GQ
Sbjct: 29 LGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQ 88
Query: 361 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 540
RAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP
Sbjct: 89 RAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPT 148
Query: 541 IALCNTDSPLRFVDIAIPCNTKSSHSIGLM 630
IA C+TDSP+R+VDI IP N K +SIG +
Sbjct: 149 IAFCDTDSPMRYVDIGIPANNKGRNSIGCL 178
Score = 44.8 bits (101), Expect = 9e-05
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +2
Query: 671 VLPRDQRWDVVVDLFFYRDPEXSEKDEQQAREQGVVXLNKXXXP 802
+LP +WDV+VDLFFYRDPE +++ E++A Q + P
Sbjct: 193 ILP-GHKWDVMVDLFFYRDPEEAKEQEEEAPAQDFAAITDYTAP 235
Score = 32.3 bits (70), Expect = 0.52
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 102 ATLSGGLA-VLALNEEAVTKMLAATTHLGAENVNFQ 206
A ++GG A L+ E+ V MLAA HLG +N +FQ
Sbjct: 2 AAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQ 37
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 206 bits (504), Expect = 1e-53
Identities = 96/150 (64%), Positives = 113/150 (75%)
Frame = +1
Query: 181 LGQKMLTSSMEXYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 360
LG K ME YVYKRR DG ++INL +TWEKL LAAR +VAIENP D+ V S+RP+GQ
Sbjct: 29 LGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQ 88
Query: 361 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 540
RAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP
Sbjct: 89 RAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPT 148
Query: 541 IALCNTDSPLRFVDIAIPCNTKSSHSIGLM 630
IA C+TDSP+R+VDI IP N K SIG +
Sbjct: 149 IAFCDTDSPMRYVDIGIPANNKGKQSIGCL 178
Score = 41.5 bits (93), Expect = 9e-04
Identities = 16/29 (55%), Positives = 24/29 (82%)
Frame = +2
Query: 671 VLPRDQRWDVVVDLFFYRDPEXSEKDEQQ 757
+LP +WDV+VDLFFYRDPE +++ E++
Sbjct: 193 ILP-GHKWDVMVDLFFYRDPEEAKEQEEE 220
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 114 GGLAVLALN--EEAVTKMLAATTHLGAENVNFQ 206
GG A AL+ E+ + MLAA HLG +N +FQ
Sbjct: 5 GGAAARALSQREQDIQMMLAADVHLGTKNCDFQ 37
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 375 VCRAYRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 482
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = -3
Query: 391 RYARQT-----SVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVV 227
RY R T SV + D+ ++ RT RGS L QPE + PRY+ H V
Sbjct: 260 RYLRMTTGGKNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCV 318
Query: 226 C 224
C
Sbjct: 319 C 319
>04_03_0360 - 14906919-14907764
Length = 281
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 96 ISAT-LSGGLAVLALNEEAVTKMLAATTHLGAE 191
IS T ++GG V+A + AVT++LAAT E
Sbjct: 155 ISGTNITGGAGVVAAYDRAVTELLAATVRYAVE 187
>04_03_0330 - 14496906-14497751
Length = 281
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 96 ISAT-LSGGLAVLALNEEAVTKMLAATTHLGAE 191
IS T ++GG V+A + AVT++LAAT E
Sbjct: 155 ISGTNITGGAGVVAAYDRAVTELLAATVRYAVE 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,077,406
Number of Sequences: 37544
Number of extensions: 533250
Number of successful extensions: 1297
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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