Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_F13
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.8  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   8.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.5  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 671 VLPRDQRWDVVVDLFFYRDPEXSEKDEQQAREQGVVXLNK 790
           +LPR ++  +   LF Y  P  SE ++  +R  G    +K
Sbjct: 605 LLPRGKKEGMPFQLFLYVSPVSSEYNQYNSRIWGGYKFDK 644


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 671 VLPRDQRWDVVVDLFFYRDPEXSEKDEQQAREQGVVXLNK 790
           +LPR ++  +   LF Y  P  SE ++  +R  G    +K
Sbjct: 605 LLPRGKKEGMPFQLFLYVSPVSSEYNQYNSRIWGGYKFDK 644


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 240 ISTSFVDIGLHTGS*HFLPQDGW 172
           +S+    IG +T S  F+P  GW
Sbjct: 174 VSSYIKKIGYNTASVAFVPISGW 196


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +1

Query: 478 VLDPAQDHQPITEASYVNIPVIALCNTDSP 567
           ++DP ++++   E   + IP++   +   P
Sbjct: 167 IVDPVEENETYDEFDTIRIPIVRSLSKSPP 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,057
Number of Sequences: 438
Number of extensions: 5443
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)