Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_F12
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.97 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 681 PPPPPXVGXXXXXXXXHPPPPXXXEKK 601
           PPPPP  G         PPPP   +K+
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -2

Query: 688 GXPPPPPXGXXAXXXXXGXPPXPPXXXKK 602
           G PPPPP            PP PP   KK
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 688 GXPPPPPXGXXAXXXXXGXPPXPP 617
           G PPPPP    A       PP PP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 688 GXPPPPPXGXXAXXXXXGXPPXPP 617
           G PPPPP            PP PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,755
Number of Sequences: 5004
Number of extensions: 24211
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)