Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_F09
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 0.66
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.0
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 3.0
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 3.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.9
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 3.9
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 3.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect(2) = 0.66
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 616 GGGGXXXXXPPPPPPP 663
G G PPPPPPP
Sbjct: 328 GNGSSNSSLPPPPPPP 343
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 619 GGGXXXXXPPPPPPPP 666
G G PPPPPPP
Sbjct: 328 GNGSSNSSLPPPPPPP 343
Score = 21.0 bits (42), Expect(2) = 0.66
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1
Query: 649 PPPPPP 666
PPPPPP
Sbjct: 361 PPPPPP 366
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 625 GXXXXXPPPPPPPP 666
G PPPPPPPP
Sbjct: 769 GVAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 642 PPPPPPPP 665
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 643 PPPPPPPP 666
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 642 PPPPPPPP 665
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 643 PPPPPPPP 666
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 270 PPPPXGXFRGXGPPP 314
PPPP G GPPP
Sbjct: 763 PPPPPPGVAGAGPPP 777
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 625 GXXXXXPPPPPPPP 666
G PPPPPPPP
Sbjct: 939 GVMPAFPPPPPPPP 952
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 642 PPPPPPPP 665
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 643 PPPPPPPP 666
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 642 PPPPPPPP 665
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 643 PPPPPPPP 666
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 642 PPPPPPPP 665
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 643 PPPPPPPP 666
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 642 PPPPPPPP 665
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 643 PPPPPPPP 666
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 642 PPPPPPPP 665
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 643 PPPPPPPP 666
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 642 PPPPPPPP 665
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 643 PPPPPPPP 666
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 642 PPPPPPPP 665
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 643 PPPPPPPP 666
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 642 PPPPPPPP 665
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 643 PPPPPPPP 666
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,044
Number of Sequences: 5004
Number of extensions: 26190
Number of successful extensions: 305
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -