Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_F06
         (921 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal prote...    29   4.7  
Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal prote...    29   4.7  
Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical p...    29   4.7  
Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical p...    29   4.7  
Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +2

Query: 536 DDPXLKMYXASVXXX---QLXLSLQ*RCKARXMEMLLXCGTIXDXVXWATKYLXTXIXVK 706
           D   LK Y +S+      Q+ +  + + KA  +E+ +  GTI   V WA ++L   + V 
Sbjct: 149 DFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVD 208

Query: 707 TV 712
           TV
Sbjct: 209 TV 210


>Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +2

Query: 536 DDPXLKMYXASVXXX---QLXLSLQ*RCKARXMEMLLXCGTIXDXVXWATKYLXTXIXVK 706
           D   LK Y +S+      Q+ +  + + KA  +E+ +  GTI   V WA ++L   + V 
Sbjct: 149 DFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVD 208

Query: 707 TV 712
           TV
Sbjct: 209 TV 210


>Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +2

Query: 536 DDPXLKMYXASVXXX---QLXLSLQ*RCKARXMEMLLXCGTIXDXVXWATKYLXTXIXVK 706
           D   LK Y +S+      Q+ +  + + KA  +E+ +  GTI   V WA ++L   + V 
Sbjct: 51  DFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVD 110

Query: 707 TV 712
           TV
Sbjct: 111 TV 112


>Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +2

Query: 536 DDPXLKMYXASVXXX---QLXLSLQ*RCKARXMEMLLXCGTIXDXVXWATKYLXTXIXVK 706
           D   LK Y +S+      Q+ +  + + KA  +E+ +  GTI   V WA ++L   + V 
Sbjct: 149 DFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVD 208

Query: 707 TV 712
           TV
Sbjct: 209 TV 210


>Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +2

Query: 536 DDPXLKMYXASVXXX---QLXLSLQ*RCKARXMEMLLXCGTIXDXVXWATKYLXTXIXVK 706
           D   LK Y +S+      Q+ +  + + KA  +E+ +  GTI   V WA ++L   + V 
Sbjct: 51  DFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVD 110

Query: 707 TV 712
           TV
Sbjct: 111 TV 112


>Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +2

Query: 536 DDPXLKMYXASVXXX---QLXLSLQ*RCKARXMEMLLXCGTIXDXVXWATKYLXTXIXVK 706
           D   LK Y +S+      Q+ +  + + KA  +E+ +  GTI   V WA ++L   + V 
Sbjct: 149 DFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVD 208

Query: 707 TV 712
           TV
Sbjct: 209 TV 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,508,213
Number of Sequences: 27780
Number of extensions: 122134
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)