Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_F05
(996 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 36 0.007
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.016
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 0.77
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 2.4
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 27 4.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 5.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 5.4
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 5.4
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 5.4
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 5.4
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 9.5
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 36.3 bits (80), Expect = 0.007
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +3
Query: 666 PPPPPPPPXXXIXIXXPPPPP 728
PPPPPPPP PPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 32.3 bits (70), Expect = 0.11
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 666 PPPPPPPPXXXIXIXXPPPPP 728
PPPPPPP PPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 653 GXXXPPPPPPPPXXXXXNXXPPPP 724
G PPPPPP PPPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 9.5
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 893 PPPPPPPXG 919
PPPPPPP G
Sbjct: 9 PPPPPPPPG 17
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.1 bits (77), Expect = 0.016
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +3
Query: 666 PPPPPPPPXXXIXIXXPPPPP 728
PPPPPPPP PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781
Score = 33.1 bits (72), Expect = 0.063
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 666 PPPPPPPPXXXIXIXXPPPPP 728
PPPPPPP PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782
Score = 29.1 bits (62), Expect = 1.0
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 645 GGGGXXXPPPPPPPP 689
G G PPPPPPPP
Sbjct: 769 GVAGAGPPPPPPPPP 783
Score = 28.3 bits (60), Expect = 1.8
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 653 GXXXPPPPPPPPXXXXXNXXPPPP 724
G PPPPPP PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 666 PPPPPPPPXXXIXIXXPPPPP 728
P P P PP I PPPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPP 766
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 650 GGXXXPPPPPPPPXXXXXNXXPPPP 724
GG PPPPP PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 669 PPPPPPPXXXIXIXXPPPPP 728
P P PPP + PPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPP 767
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Frame = +3
Query: 666 PPPPPP----PPXXXIXIXXPPPPP 728
PPPPPP P I PPP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAP 756
Score = 25.8 bits (54), Expect = 9.5
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 893 PPPPPPPXG 919
PPPPPPP G
Sbjct: 761 PPPPPPPPG 769
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.77
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 650 GGXXXPPPPPPPPXXXXXNXXPPPP 724
GG PPPPPPP + P P
Sbjct: 303 GGLPPPPPPPPPSNDFWKDSNEPAP 327
Score = 28.3 bits (60), Expect = 1.8
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 654 GXXXPPPPPPPPXXXIXIXXPPPPP 728
G PPPPPPPP P P
Sbjct: 303 GGLPPPPPPPPPSNDFWKDSNEPAP 327
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 668 PPPPPPPXXXXXNXXPPPP 724
PPPPPPP P PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPP 355
Score = 27.1 bits (57), Expect = 4.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 670 PPPPPPPXKX*XXSPP 717
PPPPPPP + PP
Sbjct: 311 PPPPPPPSRRNRGKPP 326
Score = 26.2 bits (55), Expect = 7.2
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 671 PPPPPPXXXXXNXXPPPP 724
PPPPPP PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378
Score = 25.8 bits (54), Expect = 9.5
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 668 PPPPPPPXXXXXNXXPPP 721
PPPPPP PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 665 PPPPPPPPXXXXXNXXPPPP 724
PPPP PP PPPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 665 PPPPPPPPXXXXXNXXPPPP 724
P PPPPPP P PP
Sbjct: 3 PAPPPPPPAPAPAAAAPAPP 22
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 27.1 bits (57), Expect = 4.1
Identities = 19/67 (28%), Positives = 20/67 (29%)
Frame = +3
Query: 453 RXFFFXXPPPGGXFFXXGXXPXPXFXXXFFFPPXGGGXXXFFFFXXXGXXKKKXXXGGXX 632
R F F PGG F P F F GGG G GG
Sbjct: 101 RTFHFNMGGPGGAQFFSASDPNDIFERVFGHAFAGGGGMGGGMGGMGGMDDDMDMDGGFG 160
Query: 633 XKKXGGG 653
+ GGG
Sbjct: 161 TRTRGGG 167
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 665 PPPPPPPP 688
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 667 PPPPPPPP 690
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 665 PPPPPPPP 688
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 667 PPPPPPPP 690
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +3
Query: 639 KXGGGGXXXPPPPPPPPXXXIXIXXPPPPP 728
K G PPP PP + PP PP
Sbjct: 1183 KPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 665 PPPPPPPP 688
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 667 PPPPPPPP 690
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 666 PPPPPPPP 689
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 667 PPPPPPPP 690
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 665 PPPPPPPP 688
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 667 PPPPPPPP 690
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 666 PPPPPPPP 689
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 26.6 bits (56), Expect = 5.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 667 PPPPPPPP 690
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.8 bits (54), Expect = 9.5
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 666 PPPPPPPPXXXIXIXXPPPP 725
P PP P P + PPPP
Sbjct: 729 PAPPTPAPTPAVKHHPPPPP 748
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,851
Number of Sequences: 5004
Number of extensions: 41613
Number of successful extensions: 651
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 515273988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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