Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_F05
         (996 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.14 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.35 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   1.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect(2) = 0.14
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 665  PPPPPPPPXXXXXN 706
            P PPPPPP     N
Sbjct: 1857 PEPPPPPPRNHDQN 1870



 Score = 22.2 bits (45), Expect(2) = 0.14
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 653  GXXXPPPPPP 682
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.35
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 665  PPPPPPPP 688
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 26.6 bits (56), Expect = 0.35
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 667  PPPPPPPP 690
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 893  PPPPPPP 913
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 893  PPPPPPP 913
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.0 bits (47), Expect = 4.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 894  PPPPPPXGG 920
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365



 Score = 23.0 bits (47), Expect = 4.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 895  PPPPPPXGG 921
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 727 GGGGGXXIXXXXXGGGGGGGG 665
           G  GG  +     GGGGGG G
Sbjct: 33  GASGGSIVVGANNGGGGGGLG 53


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 666 PPPPPPPP 689
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 667 PPPPPPPP 690
           P PPPPPP
Sbjct: 341 PAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,306
Number of Sequences: 438
Number of extensions: 8577
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33016347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)